Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01158 ATGGTTGCACTTAATTACTATGTTGCATCTGATGTGGACAGAAATATTGTTCATGATCATGCACAAGTTGTGCCTTTGACTCTCTTTGTTGCTGttctttgtctttgttttttaattggCCATTTGTTTGAAGGAAACCGATGGATTAATGAATCTATTGTCGCCATTATTGTTGGTTGCATTGCTGGAGGGATACTTTTGTTAATCACTAAGGGAAAAAGTTCTCACATCCTTACATTTAATGAAGAAGTATTCTTCATATACCTTCTTCCTCCCATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACGGTTCTTCCATAACTTTTTCACAATCATGTTGTTCGGTGTCATCGGTGTTTTCATTTCAGCATCTATTATTACATGCGGCAGCTGGTGGCTCTTCCCCAAGTTGAACTTCCATGACCTCACCGTGAGAGATTATCTTGCTTTAGGAACAATTTTCTCCTCAACGGACACAGTTTGTACGCTACAGGTTCTCCATCAAGATGATACTCCTTTACTATACAGCCTAGTATTTGGAGAAGGAGTGGTAAATGATGCAACATCGGTCGTACTCTTCAATGCAGTGCAAAAGATTGATGTTTCGAAACTTGACGGCCGGACATTGCATGTTATTGGTGATTTCTTGTATCTATTCTCAACAAGTACTGCTCTTGGAGTCATAGCTGGACTTATCACAGCATATATCTTGAAAACCTTAAGCTTTGGAAGACATTCAAGTGTTCGTGAAATCtcgatgatgatgataatggcATACCTATCCTACATGTTGGCAGAGCTATTTGAGCTAAGTGGAATCCTCACTGTTTTCTTTTGTGGAATATCAATGTCACATTATGCATGGCATAATGTGACTGAAATTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCGTTTATTGCAGAAACTTTCATATTTCTTTATGTCGGTATGGATGCCCTTGACATTGCAAAGTGGAAGATGACCAAATTAGGATTTGGAAATTTGATCGGAATTTACGGTGGCTTAATCTTTTTAATATTACTTGGAAGGGCTGCATTTGTTTTCCCCCTTTCAGCACTTGCCAATTATATGAATAGACGTTCTGAACAAACACCGAGTATCACATTCAAACACCAGATAATTATTTGGTGGGCGGGGCTAATGAGGGGAGCAGTTTCGATTGCTTTGGCTTTCAAACAGTTCACGTACTCCGGAGTTACTTCTGATCCGATTAATGCGACAATGATCACCAACACCATTATTGTTGTCCTTTTCACCACACTGGTGTTTGGTTGTTTAACAAAGCCACTTGTCCGCTATCTACTTCCACACCATGCAACTAAGGTAAACACTAGCCATGCAGAAGAAACAACGATACCCGCTGAGGACATGAATCTACCTTTGTTATCCTTTGAGGAATCGGCAGCAACCAACCTTAGTCGCGCAAAGGAAAGTCTATCCATGTTAATAGAAAGTCCCGTGTACACCATACATTACTATTGGAGAAAGTTTGATGATGCCTACATGAGACCGATATTTGGAGGACCGCGTGCTAACCATTTAGACTGCTAG 1587 0.39 MVALNYYVASDVDRNIVHDHAQVVPLTLFVAVLCLCFLIGHLFEGNRWINESIVAIIVGCIAGGILLLITKGKSSHILTFNEEVFFIYLLPPIIFNAGFQVKKKRFFHNFFTIMLFGVIGVFISASIITCGSWWLFPKLNFHDLTVRDYLALGTIFSSTDTVCTLQVLHQDDTPLLYSLVFGEGVVNDATSVVLFNAVQKIDVSKLDGRTLHVIGDFLYLFSTSTALGVIAGLITAYILKTLSFGRHSSVREISMMMIMAYLSYMLAELFELSGILTVFFCGISMSHYAWHNVTEISRITTRHVFATMSFIAETFIFLYVGMDALDIAKWKMTKLGFGNLIGIYGGLIFLILLGRAAFVFPLSALANYMNRRSEQTPSITFKHQIIIWWAGLMRGAVSIALAFKQFTYSGVTSDPINATMITNTIIVVLFTTLVFGCLTKPLVRYLLPHHATKVNTSHAEETTIPAEDMNLPLLSFEESAATNLSRAKESLSMLIESPVYTIHYYWRKFDDAYMRPIFGGPRANHLDC 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01158 528 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu03g01158 528 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu03g01158 528 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu03g01158 528 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu03g01158 528 Pfam Sodium/hydrogen exchanger family 29 444 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Tsu03g01158 528 Gene3D - 145 197 - -
Tsu03g01158 528 PANTHER SODIUM/HYDROGEN EXCHANGER 10 524 IPR018422 GO:0006812|GO:0015299|GO:0016021
Tsu03g01158 528 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 25 466 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu03g01158 528 PANTHER SODIUM/HYDROGEN EXCHANGER 10 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01158 Tsu-Chr3 10843579 10848724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01158 12 528 Antiporters AT5G55470 71.593 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01158 - - gmx:100813332 822.002