Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01131 ATGGACGCCGGCGAACCTCAATTCCGGCGACAATCTTCCGGCGAGATAGAACATCAACATGAAGATCCAAATCGAACTGGGTCACGACCCGATTCTGCTTCAGATGGAGCTACCACCTCTTCTAACACCTCCGGAGCTAGATACAAGCTCATGTCTCCGGCGAAGCTCCCGATCTCTAGGTCACCGGTTTTAACGATTCCGCCGGGATTAAGTCCGACCTCATTTCTTGAATCCCCCGTTCTTCTCTCAAATATGAAGGTAGAACCTTCACCCACAACAGGTTCCCTTCCTAGGCTTCAACAAACAGGACATGGTTTTATAACTTCTTCTGCGTCTGCTGCGTTTCCTGTAACCAGTGTACGCTTCAATAGTAATACTGTTGATGACGGAAAATATAGCTTCTTTGAGTTCAAACCGCACGGTAGATCAAATATGGTTCCTGTTGACTTTCACAACCATGCATGTGAAAAACCTGCTCAAATAGATGGTCAAGGAAATGTTCAATCTTTTGTTTCACCATTGGTCAAAAGTGAAATACCAGCCCCTTCAGATGAAATAAGTCTATCATCATCACCTGTTCAAATGGTTAGTTCAGGGGCTAGTGCTCATGCTGAAGTCAATTTGGACGAATTAAATCCCAGTGGCAACATACCAACTGGACTTCAAGCATCACAAGTTGATGGTAGGGGCAGTGGACTTACAGTTGCTGCCGACAAGGCATCCGATGATGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCACGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTAAAGAAACTCTTCGAACGCTCTCATGATGGCCAAATTACCGAAATAGTTTACAAAGGAACACATGATCATCCTAAACCTCAACCAAGCCGTCGATACTCTGGTGGAAATGTTATGTCTGTGCAAGAAGATAGGTCTGATAGGGCTTCTTTGACTAGCCGAGACGCTGAGCGTGACAGTACTCCAGAGCTATCGCCTGTAGCAACAAATGCTGATAGTCCAGAGGGTGCAGGGTTTTTGTCTAACCGGAGTAATGATGAGGTTGATGAAGATGATCCTTTCTCAAAGCGAAGAAAAATGGATCTTGACATCACTCCTATAGTAAAGCCTATCCGGGAGCCACGGGTCGTTGTACAAACACTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGGCAGAAGGTTGTAAGAGGGAATCCTAACCCTAGGAGCTATTACAAATGCACAAATGCTGGTTGCCCGGTTAGAAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCTGTAATAACCACATATGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAATAGTCATGATATGGCAGGACCATCAGCTGCAGGTGGACATACAAGAATCCGGCGAGAAGAAAGTGATACTATTAGCCTTGACCTTGGAATGGGCCTTAGCCCAAGAACTGCTGAAAATAGATCAAACAGTCAAGGGAGATTGATGCTTACTGAATATGGGGAGAACCAAACTCACAACAGCAATTCCAGTTTCAAGTTTGTTCATAATACTCCGCCTCCGGGATACTTTGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCGAGTGACAATTCATCTTTAAACCATTCAGCTTATCCTTGCCCGCCGAACATGGGAAGAATACTTATGGGTCCCTAA 1746 0.4422 MDAGEPQFRRQSSGEIEHQHEDPNRTGSRPDSASDGATTSSNTSGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTGHGFITSSASAAFPVTSVRFNSNTVDDGKYSFFEFKPHGRSNMVPVDFHNHACEKPAQIDGQGNVQSFVSPLVKSEIPAPSDEISLSSSPVQMVSSGASAHAEVNLDELNPSGNIPTGLQASQVDGRGSGLTVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNVMSVQEDRSDRASLTSRDAERDSTPELSPVATNADSPEGAGFLSNRSNDEVDEDDPFSKRRKMDLDITPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGHTRIRREESDTISLDLGMGLSPRTAENRSNSQGRLMLTEYGENQTHNSNSSFKFVHNTPPPGYFGVLNNNSNPYGSRENPSDNSSLNHSAYPCPPNMGRILMGP 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01131 581 SMART WRKY_cls 400 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g01131 581 SMART WRKY_cls 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g01131 581 MobiDBLite consensus disorder prediction 455 484 - -
Tsu03g01131 581 MobiDBLite consensus disorder prediction 291 370 - -
Tsu03g01131 581 SUPERFAMILY WRKY DNA-binding domain 239 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g01131 581 MobiDBLite consensus disorder prediction 29 48 - -
Tsu03g01131 581 ProSiteProfiles WRKY domain profile. 236 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g01131 581 Gene3D WRKY domain 385 461 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g01131 581 Gene3D WRKY domain 232 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g01131 581 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 33 561 - -
Tsu03g01131 581 MobiDBLite consensus disorder prediction 543 568 - -
Tsu03g01131 581 MobiDBLite consensus disorder prediction 320 334 - -
Tsu03g01131 581 SUPERFAMILY WRKY DNA-binding domain 392 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g01131 581 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 33 561 IPR044810 GO:0003700
Tsu03g01131 581 MobiDBLite consensus disorder prediction 1 54 - -
Tsu03g01131 581 ProSiteProfiles WRKY domain profile. 395 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g01131 581 MobiDBLite consensus disorder prediction 11 28 - -
Tsu03g01131 581 MobiDBLite consensus disorder prediction 543 569 - -
Tsu03g01131 581 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g01131 581 Pfam WRKY DNA -binding domain 401 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01131 Tsu-Chr3 10629800 10636385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01131 51 581 WRKY Transcription Factor Family AT4G26640 54.874 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu03g01131 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01131 - - gmx:100781491 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01131 03 10629800 10636385 Tsu05g03974 05 50710291 50714474 PCT