Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01130 ATGCAAACATCTCAGAAACATGAAATTTCTTATGGTTCAGGCAGGTTCTACGTTGAACCTGTGCAGAATCTGGACTCATATGGCTTACCTTCGAGTGAGAATCTAGAAAATTATTCTTCCTCTGATAACAGCAGCCAAACATTCTATCCTTCTCATCAAATTCTAGAACCATATGGCACCTTTGAATCTGCTTCAACAAGCAACAACAGTTTCCCTTACCAAAATTCTCCGTCTACTCTCAGTTTCTCACCAAACAATAGTCCAGTATCAAAGCTAGAGTCAAATTCATATTTGTCAAGGCCACAACATTCTCTTGAATTTGTTAATGGTTCTCCTGAGGATGATGATTCTTACTTGAGACATGACCTTGATGACCTGAGGCATAAGATGCTAGAGCTGGAATCTGTTATGCTCGGACCTAACGCAGACATGCTAGATATATACGATGCTGAAGTTAAACAAGAATCTGCTTCGTTCTTATTGGAGGCAGAGAAGTGGAAGAAAAACATGGAGATTGTATCTAAAGGTGATCTGAATGAGATGCTTTATACTTGTGCAAAAGCAGTGGATGAGAATGATATGGAGACAATTGAATGGATGGTTACCGAGTTACGCAAAATAGTATCGATTTCGGGCAGTCCGGTTGAACGATTGGGAGCGTACATGTTGGAGGCTCTTGTTTCAAAGATGGCTTCTTCTGGTAGCACAATCTACAAATCGTTAAAATGTAGTGAACCTACTGGTAATGAACTACTTTCTTACATGCATGTACTTTATGAAATATGTCCATACTTTAAGTTCGGGTATATGTCGGCAAATGGAGCGATTGCTGAAGCTATGAAGGATGAAAGTGAAGTACacataattgattttcaaattgcTCAAGGAACTCAGTGGGTGAGTCTGATCCAGGCTCTTGCTCGCAGGCCTGGAGGACCCCCAAAGATCAGAATAACAGGTATTGACGACTCCTATTCAGCTTATGCGCGTGGAGGAGGGGTTGATATAGTGGCGGAAAGGCTATCAACGCTTGCACGGTCATGTCATGTACCCTTTGAGTTCCATGCTGTTAGAGTTTCTGCTTCTGAGGTGCAACTCGAAGACTTTGAACTTCGACCTGGTGAAGCTCTGGCGGTGAATTTTGCGTTTATGCTACACCATGTGCCGGATGAAAGTGTCAACATTCTAAATCATCGTGACCGGGTTTTGCGATTGGCTAAGCACATGTCTCCTAAGGTGGTGACTCTAGTTGAACAAGAATTCAATACCAATAACGCTCCATTCTTGCAGCGTTTTGTCGAGACATTGAACTACAACTCAGCTGTTTATGAATCGATCGATGTTGTTCTTCCAAGGGATCACAAAGAGAGGATTAATGTCGAACAGCACTGTTTGGCTCGAGAAGTCGTCAACTTGGTAGCCTGTGAAGGGGAAGAAAGAGTGGAACGTCACGAGCTTATGAGTAAGTGGAGAATGCGTTTCGCAATGGCTGGATTTACTCCTTATCCATTGAGCTCCTTCATCAATTCTTCAATCAAGGATCTTCTGGATAGCTACCGTGGACATTACACTCTAGAAGAGAGAGATGGTGCACTATATCTTGGTTGGAAGAATCAAGTTCTTGTTGCTTCTTGTGCTTGGAGATGA 1647 0.4202 MQTSQKHEISYGSGRFYVEPVQNLDSYGLPSSENLENYSSSDNSSQTFYPSHQILEPYGTFESASTSNNSFPYQNSPSTLSFSPNNSPVSKLESNSYLSRPQHSLEFVNGSPEDDDSYLRHDLDDLRHKMLELESVMLGPNADMLDIYDAEVKQESASFLLEAEKWKKNMEIVSKGDLNEMLYTCAKAVDENDMETIEWMVTELRKIVSISGSPVERLGAYMLEALVSKMASSGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKDESEVHIIDFQIAQGTQWVSLIQALARRPGGPPKIRITGIDDSYSAYARGGGVDIVAERLSTLARSCHVPFEFHAVRVSASEVQLEDFELRPGEALAVNFAFMLHHVPDESVNILNHRDRVLRLAKHMSPKVVTLVEQEFNTNNAPFLQRFVETLNYNSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHELMSKWRMRFAMAGFTPYPLSSFINSSIKDLLDSYRGHYTLEERDGALYLGWKNQVLVASCAWR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01130 548 ProSiteProfiles GRAS family profile. 169 548 IPR005202 -
Tsu03g01130 548 MobiDBLite consensus disorder prediction 25 49 - -
Tsu03g01130 548 Pfam GRAS domain family 179 548 IPR005202 -
Tsu03g01130 548 MobiDBLite consensus disorder prediction 61 95 - -
Tsu03g01130 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 547 IPR005202 -
Tsu03g01130 548 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 21 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01130 Tsu-Chr3 10625015 10628377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01130 1 548 GRAS Transcription Factor Family AT1G50600 54.710 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu03g01130 GRAS 1.4e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01130 - - gmx:100785400 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01130 03 10625015 10628377 Tsu05g03976 05 50720528 50724104 PCT