Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01128 ATGTTTGATCCGTGTGCAACTGTACTTTCTTGTGCTCGCGAAACCTTGCTTCCAATACTAAATGAAGCAGTCAACATGATTAGGGGTGTCCCTAATGACAAAGTTGCAGAAATGAAAAATGAACTTCAAACCATTCAAGAGTTCATCCATCAAGCAGATAAAATTGCTGATGCTGATGAAGccaactcaagtgatgatggaacaAGAGAAAAGATCAAGCAGCTTATAGAAGCATCATTTCACATACAAGATATCATTGACGATTACATCATCCATGAGGAGCAACGACTTCCAGATCCTGGATGTGTCGCTGGTAATAACTTCGTCAAAACTAAGTTTCTCCGCCTGCAAATTGCGCACAATATTCATAGCATTAACTCTCGAGTTAATGAAATGAAAGATGCAAGTTTTAAAAAGGATAATGAAGGATCAAGCAGTTCTGCTATAGACCCGAATGACATCTTGTTGCAGAACCTTCGAAAGGCTCCTTTTAAAATGAGTGAAGCTGATGTTGTCGGCTTTGAAGAGCCGAGACAAATATTGATTGATTGGCTGTTAAATGGAAGAGATGAGCTCACAGTCGTCTCCGTAGTAGCAACGGGAGGGCACGGAAAAACTACTCTTACTAAAAAAGTTTTTGACAACATCAAGGGACACTTTGATTATCATGTATGGATCACAGTGTCAGAATCATACAATATAGAGGAGTTGCTGAGAGGGCTGGTGAAGGAGATTTGCCTACAACAAAGTGGCAATCCTCCTCATATAATTTATGAAATGACTAACGAGCCATTAGCGGTCATAGTTGATGCATTGAGAAACTACTTGCAGAAGAAAAGGtacgttttagtgtttgatGATGTATGTAACTCATCTTTTTGGGATGATATTAAATCTGCTATGATTGATAACCAAAAAGGTAGTAGGATATTAATCACCACTAGGATCATGGATGTTGCCACTTCATGTAGCGAATCTGCTTTTGTTAAAATTCATGAATTGAAAGGTTTAGATGACGAACAATCTTTAAAATTGTTCAATAAGAAGGCATTTCATGACTTGGAGGAAGTTTGTCCGGAAAATCTTATTGATATATCTtccaaaattgttaaaaaatgtgGTGGAGTACCTCTAGCAATTGTAGTCACCGGTGGTCTTTTATGCAAAACTAGAAATACAATTGAATGGAATAAGTTTAATGAAAATATCAATCCAAAGCTAGAGAACGATTTTGtgataaacaaaattttagttCTCAGTTACCATGATTTGTCTTACAATCTCAAGTCTTGTCTGTTTTATTTTGGAATATATCCTAAAGACTGTGAAGTTAACTCCAAGAGACTAATTCGACAATAG 1359 0.351 MFDPCATVLSCARETLLPILNEAVNMIRGVPNDKVAEMKNELQTIQEFIHQADKIADADEANSSDDGTREKIKQLIEASFHIQDIIDDYIIHEEQRLPDPGCVAGNNFVKTKFLRLQIAHNIHSINSRVNEMKDASFKKDNEGSSSSAIDPNDILLQNLRKAPFKMSEADVVGFEEPRQILIDWLLNGRDELTVVSVVATGGHGKTTLTKKVFDNIKGHFDYHVWITVSESYNIEELLRGLVKEICLQQSGNPPHIIYEMTNEPLAVIVDALRNYLQKKRYVLVFDDVCNSSFWDDIKSAMIDNQKGSRILITTRIMDVATSCSESAFVKIHELKGLDDEQSLKLFNKKAFHDLEEVCPENLIDISSKIVKKCGGVPLAIVVTGGLLCKTRNTIEWNKFNENINPKLENDFVINKILVLSYHDLSYNLKSCLFYFGIYPKDCEVNSKRLIRQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01128 452 Pfam NB-ARC domain 181 409 IPR002182 GO:0043531
Tsu03g01128 452 Pfam Rx N-terminal domain 8 96 IPR041118 -
Tsu03g01128 452 PANTHER - 35 452 - -
Tsu03g01128 452 PANTHER DISEASE RESISTANCE PROTEIN RP 35 452 IPR044974 GO:0006952
Tsu03g01128 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 434 IPR027417 -
Tsu03g01128 452 ProSitePatterns Glycosyl hydrolases family 5 signature. 256 265 IPR018087 GO:0004553|GO:0005975
Tsu03g01128 452 Gene3D - 8 137 - -
Tsu03g01128 452 PRINTS Disease resistance protein signature 275 289 - -
Tsu03g01128 452 PRINTS Disease resistance protein signature 194 209 - -
Tsu03g01128 452 PRINTS Disease resistance protein signature 373 387 - -
Tsu03g01128 452 Gene3D - 336 425 IPR042197 -
Tsu03g01128 452 Gene3D - 152 331 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01128 Tsu-Chr3 10606404 10607762 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01128 191 391 WRKY Transcription Factor Family AT5G45050 27.723 2.09e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01128 K13457 - gmx:100802130 376.326