Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01117 ATGTGTGACATTTTCCAAGCATCCAACATGACTGGGGGTGTCCCAAAAGAAATTGCAGACATGAAAAATGAACTTGAAAACATTGAAGAATTCATCAACAAAGCAGATAGAAtggttgatgatgttgaagatgaCAACACAAGTCAAGCAATCAAAGCAAGGATCAAGCAGCTCATAGAAGCATCTTTTGACATACAAGATGTCATTGATGAATATATGATCTATGAGGAAAAACCTCATGGATGTGCTGGTGGTGCTAACTTTGCCAAAACTATGATTCTTCGTCGCCGAATAGCTAACAAGATTCGGAACATTAAATCCCGAATTAGTGAAATGAATGATGCAAGAGGAATGGATCATAGCTTCAATATCCAATCAACTTTGGAGCAAGGGTCAATTAGTTCTGCAATAAGCTTAAACGACGCATTATTGCACAACCTTCGAAAGTCTCCATTTTATATGGATCAAGCTGATATTGTAGGCCTTGAAATGCCAAGAGACATGTTGATTGATTGGTTGGTAGAGGGAAAAGCAGAGCGCACAGTCGTCTCCATTGTCGGAATGGGAGGACAGGGAAAAACAACTCTAGCCAAGAAAGTTTTTCACAACAACAAGATTGTTAAACACTTTGATTGTCATGTATGGATCAAAGTGTCTCAATCGTACAAAATTGAAGGATTGCTTAGGGACATGTTGCACAAGTTTTACGAACAACAGGGAGCGAATCCTCCACCGAATATTCATCAAATGAATCGCGTGGTCTTAGTTGATGAAGTGAGAAAGTACTTGCAGAAAAAAAGgtatgttgttgtttttgacGATGTTTGGAACTTACATTTTTGGGATGATATCGAATTTGCTATGATTGATAACAAAATGGGTTGTAAGATATTAATCACAACAAGGGATATAAATGTTTTGAATGCTTGTAAGAAATCTTCTTTTGTTGAAGTGTACCAACTGAAATGTTTATCTGAAGAACAATCTTTGGAGTTGTTCAATAAGAAGGCATTTTATGACTTGAACGGATGTTGTCCGGAAAATCTTATTGATATATCTTCCAAAATTGTTGAAAAATGTAATGGGTTACCACTAGCAATTGTAGTCATTGGTGGTGTTTTATCTTGCAAAGATAGAAATACATTAGAATGGCGTAAGTTTAGTGAAAATCTAATTTCAGAATTAAAGGAAGATTCCATGATAAAACAAATTGTATGTCTTAGTTACCATGATTTGTCTTACAATCTCAAGTCATGTTTGTTGTATTTTGGATTATATCCCGAAGGATGTATAGTTCCATCAAAGATATTGATACGACAATGGATGGCTGAAAGGTTCGTGAAAGAGGATATGGAAAAAACTTTGGAGGAGGTTGCAGAAGGATATTTAGCAGAATTGATCAATAGAAGTTTGGTGCAAGTAGTTTCAATCAGTATTGATGGAAGAGCAAAAAGTTGTTGTGTTCATGATCTAGTGCATGCAATGATCCTTGAAAAATGTGAGGATTTAAGTTTTTGCAGGACTATTAATGAGGACGACCAAtcttctttaaatggaatggtTCGACGCCTATCAATAGCAATCAAATCTAACAATTTAATGGAAAATATTGAAAACTCACAAGTTCGATCACTTCATGTGAAAACATTAAATGAAGCCTTTGCAAGAAGAATCCCTACAAAATACAAGCGGTTGAGCGTGCTTGATTTAGAGCATGTTGGATTGCGCGATGTTCCTAAAGATTTTGGAAGTTTGAGCCACTTAAAGTATTTTAGGTTTAGGGAGAACTTTCGAGGAGACCGTTGTGTTCTTCCAAAAGTCATTGGCATGCTTGAGAATCTAGAAACCTTGGATTTAACACGTACAAGTTTCAATCCTATGCCGAAGGAGATATGCAAGCTTAGAAAGCTTCGCCATTTTCTAGGCTACAACATGTCTTTGATTCAATTGAAGGATGGTATTGGAGGCATGACATCACTACAGACTCTACGTGATGTTTATTTAGATGGTGGAGAAATTGAAGTAGTAAAGTTAATCCAAGAGCTCGGAAAGCTAAAACAACTAAGGGAATTGGTTCTGATCGGTGTTAAGAGTCAATACATGAGTGCTATATCTTCCTCAATCAATGAGATGCAACAAAtggaaaaattatatattcgTGCAAACGGATATAACATAGTCATTGATATGGATTTGAGTTCACCCCCACCTATGCTTCGCCATCTTACTCTTGAAGGGAAGTTAGAGATGTTGCCAGAGTGGATTCCAAAACTTCAAAATCTTGTTAAGCTGAAACTTAAGTATTCCCAGCTAACAGATGATAAAATGGAATTACTCAAAAGCATGCCAAACTTATTGTCCCTCTCTCTTAGGGAAAATGCTTATGAAGCTGAAAGGTTACATTTTCAAGATGGATGGTTTAAGAATTTGAAGCACCTATATCTTGAAGATTTGGAAAACTTGAATTACATCATTATTGACGAAGGCGCGTTGCGTTCCCTAGAAAAGCTACAATTAACCTTCATCCGCCATCTCAAGACGTTACCAACTGGCATTCAACACTTACAAAAACTTGAAGTCCTCAGTATCAAGCAAATGAGCCACTTATTTAGTGATGCCTTTTTCTTCGATGAAGGAAAAGCGCATTGGAGCTTCAAGCATGTGCCCGTCGTAGAAATTTAG 2682 0.3591 MCDIFQASNMTGGVPKEIADMKNELENIEEFINKADRMVDDVEDDNTSQAIKARIKQLIEASFDIQDVIDEYMIYEEKPHGCAGGANFAKTMILRRRIANKIRNIKSRISEMNDARGMDHSFNIQSTLEQGSISSAISLNDALLHNLRKSPFYMDQADIVGLEMPRDMLIDWLVEGKAERTVVSIVGMGGQGKTTLAKKVFHNNKIVKHFDCHVWIKVSQSYKIEGLLRDMLHKFYEQQGANPPPNIHQMNRVVLVDEVRKYLQKKRYVVVFDDVWNLHFWDDIEFAMIDNKMGCKILITTRDINVLNACKKSSFVEVYQLKCLSEEQSLELFNKKAFYDLNGCCPENLIDISSKIVEKCNGLPLAIVVIGGVLSCKDRNTLEWRKFSENLISELKEDSMIKQIVCLSYHDLSYNLKSCLLYFGLYPEGCIVPSKILIRQWMAERFVKEDMEKTLEEVAEGYLAELINRSLVQVVSISIDGRAKSCCVHDLVHAMILEKCEDLSFCRTINEDDQSSLNGMVRRLSIAIKSNNLMENIENSQVRSLHVKTLNEAFARRIPTKYKRLSVLDLEHVGLRDVPKDFGSLSHLKYFRFRENFRGDRCVLPKVIGMLENLETLDLTRTSFNPMPKEICKLRKLRHFLGYNMSLIQLKDGIGGMTSLQTLRDVYLDGGEIEVVKLIQELGKLKQLRELVLIGVKSQYMSAISSSINEMQQMEKLYIRANGYNIVIDMDLSSPPPMLRHLTLEGKLEMLPEWIPKLQNLVKLKLKYSQLTDDKMELLKSMPNLLSLSLRENAYEAERLHFQDGWFKNLKHLYLEDLENLNYIIIDEGALRSLEKLQLTFIRHLKTLPTGIQHLQKLEVLSIKQMSHLFSDAFFFDEGKAHWSFKHVPVVEI 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01117 893 SUPERFAMILY L domain-like 488 869 - -
Tsu03g01117 893 Gene3D - 323 409 IPR042197 -
Tsu03g01117 893 Gene3D - 151 318 IPR027417 -
Tsu03g01117 893 Pfam NB-ARC domain 167 398 IPR002182 GO:0043531
Tsu03g01117 893 PANTHER - 21 865 - -
Tsu03g01117 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 423 IPR027417 -
Tsu03g01117 893 PRINTS Disease resistance protein signature 262 276 - -
Tsu03g01117 893 PRINTS Disease resistance protein signature 360 374 - -
Tsu03g01117 893 PRINTS Disease resistance protein signature 853 869 - -
Tsu03g01117 893 PRINTS Disease resistance protein signature 182 197 - -
Tsu03g01117 893 Pfam Rx N-terminal domain 9 80 IPR041118 -
Tsu03g01117 893 Gene3D Ribonuclease Inhibitor 523 873 IPR032675 -
Tsu03g01117 893 Coils Coil 18 45 - -
Tsu03g01117 893 CDD RX-CC_like 8 112 IPR038005 -
Tsu03g01117 893 Gene3D - 410 500 IPR036388 -
Tsu03g01117 893 PANTHER DISEASE RESISTANCE PROTEIN RP 21 865 IPR044974 GO:0006952
Tsu03g01117 893 Gene3D - 4 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01117 Tsu-Chr3 10450976 10454101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01117 183 379 WRKY Transcription Factor Family AT5G45050 32.512 1.61e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01117 K13457 - gmx:100819372 810.446