Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01116 atggaagatgGTGAAAGTAGTGAAATTGGGAACCCTAATTGGGAAATTGCACTAAGAAAGTGTGAGAATATTTTAGCTTCAGGAACTAAATCTATGAAAATTAAAGCTATGGTTAATCTAGCTAAATACTCTAAAAAAGCCCCTGAACATGTATTATCTAGATTCATACCAATTCTCAATGAGATTCTTGGTCACAATGCCATTGCAAATAATTCGTTTCCGGATTCACTTCAACATGCTGCTGCTTATTGCTTGAAGTGTATTGCTTGTAGAGGTGATGGTAGTTTGGCAATTGAAATGGGTCGACATGGTGTTTCACATACTTTGATAAAGGTGTTGCCTTGGGCCGAGGGAATGATGGAGAAATCTCTGTTAAAATGTTTAATGGTTGTTGTTAGTTTTTGTAGTAAAAGTAGGGAAGTTGTTGGAGCTAATGGTGGTTTAATAATTATAGTCGGTTTGTTGATTACTTGTAGAAATGATGTTAGATTGTATTTGTTAGAGATTTTGAGTGCATTGACGCTTCTGAGGGAAGTTAGGAAGGAACTTATTGGAATATATGCTCTTGGTTTTCTTGTGGAAGCTGCTGGTGTTGGCAGCATGATTTCTAGGGAAAGGGCATGTCAATCGCTTGGATTGATTGGAGTTACGAAACAAACTAGGCGTACACTTGTTGAATTGGGAGTTATACCCGTGCTTGTGGAGTTGTTTCGCATAGGAGATAACACTATGAAACTTGTTGCTGCTAATAGTCTTGGTGTGGTAGCTCGTCTTGATTACATTAGACAAGTTGCTCAAGCCGGGGCTATACCTCTTTATGCTGAGCTTCTTAAAGGACCTGATGTTTCTGGTAAGGAGATAACTAAGAATATGTTTTGTATATTGGCTCTTGAAGAGGCGAATGCCGTTGAAATTGTTGGTCACTTGGTTAGAATTCTTAGAGAAGATGATGGTGAAGCTAAAGTAGCAGCTGCTGATGTGATTTGGGATCTGTCGGCAAACAGTAACACGATTTTTGTGATTCGGGATTCAGGTGCGATCACTATCCTTGTTGAGCTATTGAGCCATGGGAGTCAGGAAGGAAAGCTAAATGTTTCTGGGGCATTTTCTCAGCTGAGCTATAGTGAAAGCGGTAGACTGGCCCTTGCTGATGCTGGTGCAATTCCAATTCTCATTGACTTGCTACATGAGGAGACAGAGGAACTAAGTGATAATGTTGTTGAGTCTCTTTCTAATTTTCATGAAGATCCATTATACCGTGATATATTATCTGATCTTGTTAATAATCCTTCGTTTAGAAATATGCAGAATAGACTATTTAGTAATCGTACAACGGACGGCAATATGCCTGGGTATTTGCCTAGAGCTTTACGTACAATGAGTGTAGAGGATTTCATTTCGAACCAGGATCAGGTTTAA 1419 0.3883 MEDGESSEIGNPNWEIALRKCENILASGTKSMKIKAMVNLAKYSKKAPEHVLSRFIPILNEILGHNAIANNSFPDSLQHAAAYCLKCIACRGDGSLAIEMGRHGVSHTLIKVLPWAEGMMEKSLLKCLMVVVSFCSKSREVVGANGGLIIIVGLLITCRNDVRLYLLEILSALTLLREVRKELIGIYALGFLVEAAGVGSMISRERACQSLGLIGVTKQTRRTLVELGVIPVLVELFRIGDNTMKLVAANSLGVVARLDYIRQVAQAGAIPLYAELLKGPDVSGKEITKNMFCILALEEANAVEIVGHLVRILREDDGEAKVAAADVIWDLSANSNTIFVIRDSGAITILVELLSHGSQEGKLNVSGAFSQLSYSESGRLALADAGAIPILIDLLHEETEELSDNVVESLSNFHEDPLYRDILSDLVNNPSFRNMQNRLFSNRTTDGNMPGYLPRALRTMSVEDFISNQDQV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01116 472 PANTHER U BOX DOMAIN-CONTAINING 4 467 - -
Tsu03g01116 472 SUPERFAMILY ARM repeat 15 423 IPR016024 -
Tsu03g01116 472 SMART arm_5 375 415 IPR000225 GO:0005515
Tsu03g01116 472 SMART arm_5 217 257 IPR000225 GO:0005515
Tsu03g01116 472 SMART arm_5 135 175 IPR000225 GO:0005515
Tsu03g01116 472 SMART arm_5 334 374 IPR000225 GO:0005515
Tsu03g01116 472 SMART arm_5 290 333 IPR000225 GO:0005515
Tsu03g01116 472 Gene3D - 17 258 IPR011989 -
Tsu03g01116 472 Gene3D - 259 431 IPR011989 -
Tsu03g01116 472 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 4 467 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01116 264 437 U-box Gene Family AT3G46510 29.787 1.67e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01116 - - cam:101502901 580.867