Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01114 ATGAGTTTTGCAGTTACTGAGAATGGAGAAAATTGGAGCATGGGTCAAAGGCAGTTGGTATGCCTCGGCCGTGTTCTACTTCAGAAAAGCAAGATCTTGGTCCTCGATGAAGCGACTGCATCAGTTGATACAGCTACAGATAATATAATTCAGCAGACAGTTAATCAACATTTCACTGATTGCACAGTTATTACCATTGCTCATAGAATAACTTCAATCCTCGATAGTGACATGGTTCTGTTTCTCAGCGAAGGCAAGGACCTAGTTTTTTCGCTGCTTCTTTATTTCATCAGTTTTTACTCATAA 306 0.3987 MSFAVTENGENWSMGQRQLVCLGRVLLQKSKILVLDEATASVDTATDNIIQQTVNQHFTDCTVITIAHRITSILDSDMVLFLSEGKDLVFSLLLYFISFYS 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01114 101 Gene3D - 1 91 IPR027417 -
Tsu03g01114 101 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 7 87 - -
Tsu03g01114 101 PANTHER ABC TRANSPORTER C FAMILY MEMBER 3 7 87 - -
Tsu03g01114 101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 86 IPR027417 -
Tsu03g01114 101 Pfam ABC transporter 5 40 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01114 Tsu-Chr3 10428405 10428710 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01114 5 86 Calmodulin-binding Proteins AT2G36910 32.927 1.65e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01114 - K05666 mtr:MTR_3g056645 155.606