Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01113 ATGTACTCTAACTTGCTAAGTAACAGTGGTCTACTTTATATGCAGCGATACTACTCTGCATCAGCACGTGAATTGGCACGATTAACTGGTATATGTCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGAAATGAATATGCAATTGATAGACAAATATTCGCAACCTAAATTATACAGTGGGAGTGCAAAGGAATGGCTGAGTTTCAGATTGGATCTTTTATCCATTACAGTATTTGCGTCCTGCTTGGTTTTCTTGGTATCTTTTCCAAGTTCAATAACTAATGCTAGTATTGCGGGATTGGCTGTGACATATGGGATTAACCTAAGTGATATACAATCTGATTTAATTCGTTTTTTTTGCGCATTGGAGAACAAAATTGTATCTGTAGAAAGAATACTTCAGTACACTTCCATCCGAAGTGAAGCACCTCTTGTAATAAAAGACAACCGACCAAATGATTCTTGGCCATCATTCGGAGAGGTTCATATTCAGGATTTACAGGTTCAATACGCTCCTCACTTGCCTCTTGTTTTACGCGGACTAACATGCACTTTTACTGCTGGAGCCAAAACCGGCATTGTTGGAAGAACTGGAAGTGGAAAATCAACACTTGTGCAAACACTTTTCAGACTTATTGAACCTGTTGCAGGACAAATATTGATAGATAATATCAACATTTCATTGATTGGAATCCATGATTTAAGGTCAAGATTAAGCATAATTCCTCAGGATCCAACAATGTTTCAAGGGACAGTAAGAAGCAATCTGGACCCGCTCGAAGAGTACACAGATGAACAGATTTGGGAGGTAAATTGGTTTTGTTTGCAAATAAGAAATAACTTATCCCTTTTGTACAagttataa 918 0.3682 MYSNLLSNSGLLYMQRYYSASARELARLTGICQAPVIQHFSETISGSTTIRSFEQESRFNEMNMQLIDKYSQPKLYSGSAKEWLSFRLDLLSITVFASCLVFLVSFPSSITNASIAGLAVTYGINLSDIQSDLIRFFCALENKIVSVERILQYTSIRSEAPLVIKDNRPNDSWPSFGEVHIQDLQVQYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRLIEPVAGQILIDNINISLIGIHDLRSRLSIIPQDPTMFQGTVRSNLDPLEEYTDEQIWEVNWFCLQIRNNLSLLYKL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01113 305 SUPERFAMILY ABC transporter transmembrane region 11 159 IPR036640 GO:0005524|GO:0016021
Tsu03g01113 305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 11 142 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu03g01113 305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 290 IPR027417 -
Tsu03g01113 305 Pfam ABC transporter 196 287 IPR003439 GO:0005524
Tsu03g01113 305 Gene3D - 163 296 IPR027417 -
Tsu03g01113 305 Gene3D ABC transporter type 1, transmembrane domain 9 162 IPR036640 GO:0005524|GO:0016021
Tsu03g01113 305 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 12 292 - -
Tsu03g01113 305 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 12 292 - -
Tsu03g01113 305 Pfam ABC transporter transmembrane region 12 105 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01113 Tsu-Chr3 10422084 10424405 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01113 177 274 Calmodulin-binding Proteins AT2G36910 31.000 1.49e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01113 - K05666 mtr:MTR_3g056645 485.337