Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01109 ATGGTCAATGAGGCAGCAAGAAAGATTACTTACAACAAGAGGAAAAAGAGTCTCATCAAGAAGATTGATGAACTCACCACCCTTTGTGGGATTGATGCTGGTGCAATATTTTATAGTGATTTTCATCCAGAGCCTGAGGTCTCGCATTCCCCGCAGGAGATCCAAAGGATTATCAACAAATTCAAGAATTGTTCTGAACTTGAGAAAGGTAAGAAGAAGCAAAACCATGAAAGCTATTTGATGCATAGGATTACAAAGTCCAAAGAGCAATTGGTGAAACTAGAGAAGAACAATTGGGAAATGCAGAACTCCTTGATGGTGTATCAATGTCTTCTCCAAGAGAAATTCATCAACACTTTGAACTCAAATGTTTTGAATAATCTAGTATTTGAAATTAATGGGAAGTTGGAGGAAATTGCTTCAAAAGCAAATGAACTAGACACAAATGCAACTAGTTag 459 0.3682 MVNEAARKITYNKRKKSLIKKIDELTTLCGIDAGAIFYSDFHPEPEVSHSPQEIQRIINKFKNCSELEKGKKKQNHESYLMHRITKSKEQLVKLEKNNWEMQNSLMVYQCLLQEKFINTLNSNVLNNLVFEINGKLEEIASKANELDTNATS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01109 152 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Tsu03g01109 152 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 40 IPR002100 GO:0003677|GO:0046983
Tsu03g01109 152 Gene3D - 3 89 IPR036879 GO:0003677|GO:0046983
Tsu03g01109 152 Coils Coil 84 104 - -
Tsu03g01109 152 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 3 148 - -
Tsu03g01109 152 ProSiteProfiles MADS-box domain profile. 1 40 IPR002100 GO:0003677|GO:0046983
Tsu03g01109 152 SMART madsneu2 1 50 IPR002100 GO:0003677|GO:0046983
Tsu03g01109 152 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01109 Tsu-Chr3 10381410 10381868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01109 3 152 Type I MADS-box Gene Family AT1G65300 35.333 4.31e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g01109 SRF-TF 6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01109 - - mtr:MTR_3g466830 205.682