Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01104 ATGGGGTTAGAGCTTCATGTTCTCATATCATTTATCATTGGTTTCCTCTTGTTCATGCTAATCAAAATTACATGGAAATCAAAAACTAAGAAAACAAACTCCAAATTACCACCAGGACCAAGAAAACTTCCATTCATAGGGAACATCCATCAACTTGGACCCTTACCTCATCAATCCCTAGCAAAATTGGCACAACAATATGGACCTCTCATGCATATGCAACTTGGTGAACTTTCTTGCACAATTGTCTCATCTCAAGAAATGGCTAAAGAAGTGATGACAACACATGATCTCAACTTTGCAAATAGGCCTCCAGTTCTTGCAGCTGAAATAATCACTTATGGATATAAAGGAATGACTTTTTCTCCACATGGATCATATTGGAGACAAATGAGAAAAATTTGTACTGTGGAGCTACTATCACAAAATAGAGTTGACTCTTTTAGATTACAAAGGGAAGAAGAATTGgcaaaatttgtcaaagataTAATATTGAATGAAGGGTCACCTATAAATCTTAGTGAAAAGATTGATTCATTGGCTTATGGATTAACTTCAAGAACAGCTTTTGGTGCACATGTTGAAGATAAAGAAAAGTATAGGAAACTTATGAAAGATGTGTCAGAAATTGCTGGAGGGTTTTCTATTGCTGATTTGTTTCCTTCAATTGGAATTCTTCAAGTTCTTACAGgattaaggaaaaaaattgagaagCTTCATAGTGAAATAGATAAGATACTAGAAAACATTGTAAGAAGTCATAGAGAAAAGAACTTAGAAACAAAGGGTATGGAAGAAACAGGGGAGGATCTTGTTGATGTTCTTTTGAAGCTGCAAAAGCATAGTGATTTGGAACATCCTTTATCAGACATCATTATTAAAGCTACAATTTTGGATATCTTTAGTGCGGGAAGCCAAACCACATTCACAACTTTAGAGTGGGCCATGTCAGAATTGATTAAAAACCCAAATGTGATGCAAAAAGCACAAACTGAGGTAAGAAATGTCTATAATAAAAAAGGAGATTCAAGATATTGGATCGAAGCCGATAAGTTCTATCCAGAAAGATTCATTAATAGCTCGATTGATTATAAAGGTGTCGATTTTCAATTTATACCATTTGGTGCTGGGAGGAGATTGTGTCCTGGTATAGCATTTGGTATTGCTAACTTGGAGATCTCACTTGCAAATTTACTTTTCCATTTTGATTGGAAAATGCCAATTGGAGATAAGGCTCATGAGCTTGACATGATTGAATCATTTGGATTGGCTGTTAGAAGAAAGCATGATTTGTTGTTGGTTCCCACCCTTTATCACTTTTGTTAA 1326 0.3424 MGLELHVLISFIIGFLLFMLIKITWKSKTKKTNSKLPPGPRKLPFIGNIHQLGPLPHQSLAKLAQQYGPLMHMQLGELSCTIVSSQEMAKEVMTTHDLNFANRPPVLAAEIITYGYKGMTFSPHGSYWRQMRKICTVELLSQNRVDSFRLQREEELAKFVKDIILNEGSPINLSEKIDSLAYGLTSRTAFGAHVEDKEKYRKLMKDVSEIAGGFSIADLFPSIGILQVLTGLRKKIEKLHSEIDKILENIVRSHREKNLETKGMEETGEDLVDVLLKLQKHSDLEHPLSDIIIKATILDIFSAGSQTTFTTLEWAMSELIKNPNVMQKAQTEVRNVYNKKGDSRYWIEADKFYPERFINSSIDYKGVDFQFIPFGAGRRLCPGIAFGIANLEISLANLLFHFDWKMPIGDKAHELDMIESFGLAVRRKHDLLLVPTLYHFC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01104 441 PANTHER CYTOCHROME P450 71B11-RELATED 342 439 - -
Tsu03g01104 441 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 374 383 IPR017972 GO:0005506|GO:0016705
Tsu03g01104 441 Gene3D Cytochrome P450 28 342 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 Pfam Cytochrome P450 37 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 Pfam Cytochrome P450 341 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 PRINTS E-class P450 group I signature 381 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 PRINTS E-class P450 group I signature 371 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 PRINTS E-class P450 group I signature 335 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 Gene3D Cytochrome P450 343 432 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 PRINTS P450 superfamily signature 372 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 342 439 - -
Tsu03g01104 441 SUPERFAMILY Cytochrome P450 37 435 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu03g01104 441 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 9 341 - -
Tsu03g01104 441 PANTHER CYTOCHROME P450 71B11-RELATED 9 341 - -
Tsu03g01104 441 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01104 Tsu-Chr3 10330077 10332284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01104 12 440 Cytochrome P450 AT5G25120 34.469 1.71e-95 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01104 - K23806 gmx:100819247 459.914