Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01096 atgGCAGACATAGCAGTGTCATTTGCTATTGACAAACTGCTTCCATTGTTAATAGAAGAAGTCAATTTGCTGAAAGGTGTTCACAAGGAATTTGCAGACATTAAAGATGAACTGGTAAGCATCCAAGCCTTCCTTAAGGATGCTGATAGAAGAGCTGCAGCTCAAGCACCCAGTGAAATGGAAAAAATATGGGTGAAGCAGGTGAGGGAAGTTGCTTTTCGCATAGAAGACATAGTCGATGAATATATGCTTTCTTTAGAGAAACAACCTAAAGATCAACCTGATAATCCTGGATGTGCAACTTTACTCCAAAAGATCACTCACTTGTTCAAACCTTTGAAACAACGCCATCAACTAGCGTCTGAGATTCAGAACATTAAGTCATCGGTGTCTCGGATCAAGGAAAGAAGTGAAAGCTATGGTTTCCAACGTTCTTTGGATCAAGGATCAAGCAATTCTAAAAGCCGGAATGCCAAATGGTACCCCCTTCGAGAGGATGCTCTTCACATTAAAGAAGCGGACGTCGTGGGCTTTGAAGAACcaagaaaaaatttgattgattgGATATTGTTCGAAGGAAGAGAGGATCCCACTGTCATCTCTGTGGTAGGAATGGGAGGGCAGGGAAAAACAACTCTAGTAAAGAAAGTTTTTGACAACAAGGATGTCATTGCACACTTTGATTGTCGTGTATGGATCACAGTGTCACAAACATACGATGTTAAAGAGTTGTTGCGGGACATGTTGCaaaaaatttacaaacaaaatGGAGACAAGCCGCCTACAAATATTAATCAAATGGATCAAAGGTCGTTGAATGAAGAACTGAGAAACCACTTGAAACAAAAGAGGTATGTTGTCGTGTTTGATGATGTTTGGAGTGTAAATTTTTGGGATGATATTAAATTTGCTGTAAGTGATAATAAAAGTGGAAGTAAGATATTTATAACAACAAGGAACGAGGAAGTTTTGGAGTCTTGTAAATTATCTTCTTTCACTAAAGTGCTTAATTTGCCACCTTTAACGCAAGAACAGTCTTtgaaattgttcaaaaagaGGGCTTTCAAATTTGACTTTGGTGGATGTTGTCCAGAAGAGCTCATTGGTATAGCTAATGAAATTGTTCAAAAATGTAAGGGCTTACCACTAGCAATTGTTGCCATTGGTGGTCTTTTGTCTACAAGAGAGAAAAATGAGTTTGAGTGGCAGAGATTTAGTGAAGATCTAAGTTTAGAGCTAATGAGAAATAAATATCTAATtgagataaaaaatattgtaggTTTAAGTTATGATGATTTGCCTTACTATCTCAAGTCATGTTTGTTGTATTTTGGAATGTATCCAGAAGATTATGAAGTTAAATCAAATAAAGTGATTCAACAATGGATAGCCGAAGAGTTTGTGAAAGAAGAAACGGGGAAGACTTTGGAAGAAGTTGCAGAAGAATATTTAACAGAGTTAATCAATAGAAGCTTGGTGCAGGTATCTTCGCTTAAAATTAATGGTAAAGCTAAAAGTTGTCGTGTTCATGATCTAATACGTGAAATAATCCTTGAAAAGTTTGAGGATTTAAACTTTTGCACGCAAATTAGTGAAGTTGataaagaagaaatttttgaGAATGAAATCCCTATAAATTTCAAGCTGTTGAGAGTTCTTGATTGTAACTCTAAGATGCTTGGGAAATTTGGAAATTTGATCCACTTGAAGTATTTAAGCTTGTGGTCTGTTGGGATATTAACATCTGTTGACATGCACCGTAACCTAGAGACCTTGAATATAGGGACTCCACAAAGAGTTACGTTGCCCAAAGAGATTGGGAAACTTCGAAAACTACGACATCTTACTGGAAGGGAACTGTCTTTGGATGAATTTCAGGATGATATTGGAGAGATGACATCCCTACAAACGCTACATTATGTTGATTTAGGTACGGATGGAGCGGCAAAGATAATTAAAGGGTTAGGAAAGCTGAAGCAGATGAGGGATTTGAGGTTGGTTAAAGTTCGTAGATATGATGGAATCATTTTATCTTCGTCAATCAATGAAATGCAACACTTGGAAAAACTATCTGTTGAATCAAGAGGTGACGGGGGTGAAGTCCTTGATTTGGATTGGATTTCATTGCCAACTAAGCTTCAAAAGCTTACACTAAAAGGAATTCTAAAGAATTTGCCCGAATGGGTTCCAGAGCTTCAAAATCTTAATGGGTTGATGTTGTACGAGTCTTGTTTAACTGAAGATCCATTGAAATCACTAAATTGTTTGCAACACTTGTTGTCCCTCTCTCTACATGCTGCTTATACAGGTTTGTGCTTGCATTTTGAAGATGGCTGGTTTCAAAATCTAAAGGAACTGAATGTTACACATTCCTATGTATTGAGAAAAGTTATTATTGAAAAAGGAGCACTGCCTTCTCTGAAAATGCTAAACTTTGGCATGCTCCCACTGGAGAATATACCCACTGGCATCCAGCACCTGGAGAAGCTTGAAGTTCTCCGTTTTTCTTTTATGCCAGATGCATTTGTGCAGAATATTTCTACCGAGGATTGGAATTTGATGCAGCACGTGCCCCTTGTACAAATTTCTGACAATAACGGAATTTCTATTCCAAAGCCACCAAGGAGTTTTACCATACTCAAGGAGAAAAAAGGTGTGTTTTTTCTTcctaaaacttaa 2679 0.3647 MADIAVSFAIDKLLPLLIEEVNLLKGVHKEFADIKDELVSIQAFLKDADRRAAAQAPSEMEKIWVKQVREVAFRIEDIVDEYMLSLEKQPKDQPDNPGCATLLQKITHLFKPLKQRHQLASEIQNIKSSVSRIKERSESYGFQRSLDQGSSNSKSRNAKWYPLREDALHIKEADVVGFEEPRKNLIDWILFEGREDPTVISVVGMGGQGKTTLVKKVFDNKDVIAHFDCRVWITVSQTYDVKELLRDMLQKIYKQNGDKPPTNINQMDQRSLNEELRNHLKQKRYVVVFDDVWSVNFWDDIKFAVSDNKSGSKIFITTRNEEVLESCKLSSFTKVLNLPPLTQEQSLKLFKKRAFKFDFGGCCPEELIGIANEIVQKCKGLPLAIVAIGGLLSTREKNEFEWQRFSEDLSLELMRNKYLIEIKNIVGLSYDDLPYYLKSCLLYFGMYPEDYEVKSNKVIQQWIAEEFVKEETGKTLEEVAEEYLTELINRSLVQVSSLKINGKAKSCRVHDLIREIILEKFEDLNFCTQISEVDKEEIFENEIPINFKLLRVLDCNSKMLGKFGNLIHLKYLSLWSVGILTSVDMHRNLETLNIGTPQRVTLPKEIGKLRKLRHLTGRELSLDEFQDDIGEMTSLQTLHYVDLGTDGAAKIIKGLGKLKQMRDLRLVKVRRYDGIILSSSINEMQHLEKLSVESRGDGGEVLDLDWISLPTKLQKLTLKGILKNLPEWVPELQNLNGLMLYESCLTEDPLKSLNCLQHLLSLSLHAAYTGLCLHFEDGWFQNLKELNVTHSYVLRKVIIEKGALPSLKMLNFGMLPLENIPTGIQHLEKLEVLRFSFMPDAFVQNISTEDWNLMQHVPLVQISDNNGISIPKPPRSFTILKEKKGVFFLPKT 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01096 892 Gene3D - 431 517 IPR036388 -
Tsu03g01096 892 Pfam Rx N-terminal domain 5 90 IPR041118 -
Tsu03g01096 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 444 IPR027417 -
Tsu03g01096 892 PANTHER - 30 834 - -
Tsu03g01096 892 Pfam NB-ARC domain 190 431 IPR002182 GO:0043531
Tsu03g01096 892 PRINTS Disease resistance protein signature 199 214 - -
Tsu03g01096 892 PRINTS Disease resistance protein signature 279 293 - -
Tsu03g01096 892 PRINTS Disease resistance protein signature 378 392 - -
Tsu03g01096 892 Gene3D - 340 430 IPR042197 -
Tsu03g01096 892 CDD RX-CC_like 2 135 IPR038005 -
Tsu03g01096 892 Gene3D - 165 332 IPR027417 -
Tsu03g01096 892 Gene3D Ribonuclease Inhibitor 518 884 IPR032675 -
Tsu03g01096 892 PANTHER DISEASE RESISTANCE PROTEIN RP 30 834 IPR044974 GO:0006952
Tsu03g01096 892 SUPERFAMILY L domain-like 509 867 - -
Tsu03g01096 892 Gene3D - 4 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01096 Tsu-Chr3 10244006 10246793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01096 196 389 WRKY Transcription Factor Family AT5G45050 26.667 3.54e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01096 K13457 - gmx:100819372 800.816