Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01068 ATGTCTAGTGTTGGTCTTATCTTCAAGATGACGGTGGACGATCGGTGTTTTGTGGAATGGAAAGAGCAATTTGTTTCACAAGAGCGTGGACATCGTATAGTTCACTATTACTTTAAGGATTCTGCTGGAGAATCATTCCTTGCAGTTATTGGCACTGAGAGGAGTGTTAGACATATGTGCTATGTTATTGCTGAGGAGTTTCTGGAAATTTGTGGATTGGAAATTCCACCTGGTTTCAAATGGAGATCTAGAAGAGAGGTTGTTGATTGGCTAACGTCGATGCTTTCAAAGCAGCATCCGCAGGAAGATAGAAATGTATGGCTTGCTCATGGGATAAAAAATGGCAGTGTCAAAGAAGTTAGTGCAAAAATGGTGGATGACAAGGACATTCCAATGAGTAACTCCAAATTATCCAATTCAGACATTGCTTGGTCAGGACTTGCGTGGACATGTGGCAAACAACTCAAACATTATCCCTCTTTTTGCAGGAATGGCATCCAAATAGGAATTCAATCCTTTGTCTTCGTCATGGGCAATGGAGAGAACCATTATGTTGCTTATTTAGAGGATATGTATGAAGACAAGAGGGGGCAGAAAAAGGTTAAAGTAAGGTGGTTTCACCACAATCAGGAAGTCAAGGGTGCAATTCCCGTACGAAATCCTCATCCTCGGGAAGTTTTCATCACATCTTATTCTCAAGTCATCAGTGCAGAGTGTGTTGACGGACCTGCCACAGTCTTAACTCGTCAACATTATGAAAAATGCACGCCTTATTTTTCTCCCACTTCCAAAGACAGAATACATTTGTGCTTTCGGCAATTAAAAGGCAACAAAGTCAAGCCTTTTGACTTAAGTAAGCTGCGCGGCTACTATACTCAGCCAGCACTTTCTTCCTTGCAAGTTGATACTATCAACAACACCGAGTCTCAGAGCAACAGCCTCACAGGAGAAGATGACGATTTGGATGTTGGTGAGGATACAAAGAGCGGAGATAAGAGGAGTAGAAGTAATGGTCGACAAGGGGTTAGGAAGTTGATTAAAAGTAACCAAATGATGGGATACCAAACTTTTCAGGTTGTAAATTATGCTAGGCCAGATAGGAGATTGCTTTCTTTGAAACAGGATGAATGTAAACCTTGGTATAACCTGACATGCAAAGTTGATGACAAGATAGAGGTACTCAGTCAAGATAGTGGCATCCGAGGATGTTGGTTTAGGTGTACAGTTCTGCAGGTTGCTCGGAAACAGCTGAAAGTTCAATATGATGATGTTCAGGATGAAGACGGAAGTGGAAATCTTGAGGAGTGGATCCCTGCTCTTAAGTTGGCCAAGCCTGATAAACTTGAGATGAGACAACCTGGCCGATCCACCATCAGGCCAGCTCCACCTAATGAAGAACAAGAAATGATTGTCGAAGTTGGAACTGCCGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGCGTTGTAACTACAATTGACAACTGTGGTGATGACAGTGTTCAAGTCTACTTGCCTGGTGAAAGCTTGCAAGTGACAGTACATAAGAAGGATTTAAGAATATCTAGAGATTGGTTAGGCGGCACTTGGATTAATATAAAGGCAAAGCCTGATATAACTCCAACAATATTAACCACTAATAGCTTTAACACAAACCTCACCATGTCTCCATCTATGGCTAAAGACGCAGACTCAGTTGGTTTTGCTAATTCATGTCATGAAGTTCCTGCTGGTGAGAAGTCTAATGAACCTGATATTGTTGAAGAGAAACTTGTATGTTATAGTGTTGCTGAAGATAAGGTTTGTGTCCAAGATGATAAACCACCTTCAGAAAAAAGTACAGATATTGAAGATAATGGTAGTAATAATGATAAGGACAACAATGAGAATGGTGATAACAAGAATGGTAATGATGAAAATAGCGATGTTGTGGAGGTGATTGTGACTTCGGGAGCTGACTGTAAAGGTGTAGAACTAATGGATGTGGCCGTGTAA 1995 0.415 MSSVGLIFKMTVDDRCFVEWKEQFVSQERGHRIVHYYFKDSAGESFLAVIGTERSVRHMCYVIAEEFLEICGLEIPPGFKWRSRREVVDWLTSMLSKQHPQEDRNVWLAHGIKNGSVKEVSAKMVDDKDIPMSNSKLSNSDIAWSGLAWTCGKQLKHYPSFCRNGIQIGIQSFVFVMGNGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDGPATVLTRQHYEKCTPYFSPTSKDRIHLCFRQLKGNKVKPFDLSKLRGYYTQPALSSLQVDTINNTESQSNSLTGEDDDLDVGEDTKSGDKRSRSNGRQGVRKLIKSNQMMGYQTFQVVNYARPDRRLLSLKQDECKPWYNLTCKVDDKIEVLSQDSGIRGCWFRCTVLQVARKQLKVQYDDVQDEDGSGNLEEWIPALKLAKPDKLEMRQPGRSTIRPAPPNEEQEMIVEVGTAVDAWWSDGWWEGVVTTIDNCGDDSVQVYLPGESLQVTVHKKDLRISRDWLGGTWINIKAKPDITPTILTTNSFNTNLTMSPSMAKDADSVGFANSCHEVPAGEKSNEPDIVEEKLVCYSVAEDKVCVQDDKPPSEKSTDIEDNGSNNDKDNNENGDNKNGNDENSDVVEVIVTSGADCKGVELMDVAV 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01068 664 PANTHER OS07G0607300 PROTEIN 13 639 - -
Tsu03g01068 664 MobiDBLite consensus disorder prediction 604 643 - -
Tsu03g01068 664 SMART agenet_At_2 383 448 IPR014002 -
Tsu03g01068 664 SMART agenet_At_2 469 527 IPR014002 -
Tsu03g01068 664 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 13 639 - -
Tsu03g01068 664 Pfam Agenet domain 388 463 IPR008395 -
Tsu03g01068 664 ProSiteProfiles BAH domain profile. 166 285 IPR001025 GO:0003682
Tsu03g01068 664 CDD BAH_plant_1 161 290 - -
Tsu03g01068 664 MobiDBLite consensus disorder prediction 604 639 - -
Tsu03g01068 664 Gene3D - 134 282 IPR043151 -
Tsu03g01068 664 SMART BAH_4 166 285 IPR001025 GO:0003682
Tsu03g01068 664 Pfam BAH domain 172 270 IPR001025 GO:0003682
Tsu03g01068 664 MobiDBLite consensus disorder prediction 302 344 - -
Tsu03g01068 664 MobiDBLite consensus disorder prediction 302 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01068 Tsu-Chr3 9919020 9924474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01068 395 525 PHD Transcription Factor Family AT5G58610 29.630 1.07e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01068 - - mtr:MTR_3g058500 1159.05