Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01055 ATGAGCAGCGAACCTTCCGctatatcttcttcttcttctgtggTGTCTTCGAAAAATTATGACGTTTTTCTTAGCTTCCGAGGTGAGGATACTCGCAGAAACTTCACAAGCCATCTTTATGATGCTCTGAGTCGAAAGAAAGTCGAAACCTTTATAGACAACAATGAGCTTGAAAAAGGAGATGAGATCTCTCAAGCACTCATTGAAGCCATTGAAGAGTCACATGCATCTATTGTCATCTTCTCAGAAAACTATGCTTCCTCAAAATGGTGCTTGAATGAGCTCAAAAAGATTCTAGAATGCAAGAAATATAAGGAACAGATTGTGATACCTGTTTTTTACAACATAGATCCATCACATGTGAGAAAGCAGACCGGGAGTTACAAGCAAGCCTTTGCAAAACATAAGCGAGATTTGAAGAACAATAATGACACGTTGCAGAAGTGGAAAGCTGCCCTCACTGAGGCAGCTAATTTAGTCGGTTGGGACTCTGAAAATTACAGGACTGAATCAGACTTCATTAAGGAGATTGTCGAAGATGTTTTGCGGAAACTGAACCTTAGATACCAATATGAAATTAAGGGGCTTGTTGGAATTGAGAAAAATTATGAACAAATTGAATCAATACTGAAAATTGGGTCAAATGATGTTAGAGTCATTGGAATATGGGGGATGGGTGGCATAGGAAAAACCACCCTTGCTAAGGCTTTATATGCTAAACTGTATTCCCAATTTGAAGGTCGTTGCTTCTTCAATGTAGTGGATGAACCAAATAAGTATGGACATAATGGTGCACACAATAGATTTGTTTCTACATTGTTAGAGGAGGAAAATCTTCATCCTGATGCACCCTACTTAGAATCCCCTTTCTCTGTGAGAAGGATTGCACGTAAAAAAGTTTTCATTGTGTTTGATGGCGTGGAAACCTTTGATCAAATAGAAGATGTTATCCTAAAAATTGATGGGTTGGGATTGGGTAGTAGGGTGATTATTACATCTAGAGATAAGCACATTTTTAGTCGGTTCAGTAAATGTGAAATATATGAGGTTAAAGAATTGAACAAAGATGATTCTCTTCTGCTATTCAGTATGACGGCCTTCGTAGGAAAACATCTTGAAATTGGATATGAAGCTTTAGCAGAAAGTGTAATTGCCTATTGCAAAGGCAATCCTTTGGCTTTAAAAGTTTTAGGTGCAAATCTCCATTCAAGAGAAAAACAAGCATGGGAAAATGAATTGGAAAAGCTCAAAAAGATTCCCAATAGGAAAATTTATGATGTATTAAAATTGAGCTATGATGACTTAGATCGTTGTCAAAAGGCCATATTTCTAGACATTGCATGCATTTGGAGAGAAGAGAATAAAGGTTTTGCAATATATCTATTGGATGCTTGTGATTTCTATGCAAAAAGTGGGATAGAAATACTTCTAAATAAAGCTCTCATACAAGTAAAATCATCTTGGAGTTATGGGTTGGAAGTTGATAGGGTAGAAATGCATGATTTGTTAAAAGAAATGGGACGGGaaattgttaataaaaaatctaaagatCCTGGGCAACGAAGTCGATTGTGGAAAACTGAAGAAATATCATAtgtattgaaaaaaaacaaGGGAACTGAAGCTGTCGAAGTTATAACCTTTGATAGTACGGAAGTTGAGGATCTTTACTTAAAGCCCGATTCCTTTAGAAAGATGACAAACTTAAGATATCTTAAAATCTATAATGCATCTGATGGGAGCACATGCAATGTGTACTTTCCCGATGGTCTTGAGTGGCTTTCTGATAAATTGAGATACTTTCGGTGGGATGGATACTGCCTTGAGTATTTGCCATCAACCTTTTGTGCTGAAATGCTTGTAGAGCTTCGCATGCGTAATAGCAAGCTTAAAAAGCTGTGGGATGGAGTTCAGAACCTTGTGAATCTAACAATAATTGGGCTTGAATCCTCCAAAGATCTGATTGAGATCCCATACTTATCTAGTCACCAGGAACAATTGCTGTGGTCAACAGAGTGGATAAAAGGGGTGCGGGTCTTACCTGTTTATGCAGTAAAATGGAAGTTGGAGCTGTatggtagtagtagtagtattaataGTAGTAGCAGTGAGGAAACTGTTGATGAAGCCAGAAGCTCTAACAATGAAAACGAAGGTGACCAGGAACAACCCTCTTATCCTCGCAAACTTTGTTGTTCAATCGGTCTTTTGTTGGGCACCCCAGAAGCTAAGCCCTGGGACTGTGACTGTACACTCTTTTTCTCCTCTATTGCAACACACTGGATTCTAACTTTGGCACTTGGAATTCGTGAGGATACTCGCAGAAACTTCACAAGCCATCTTTATGATGCTCTGAGTCGAAAGAAAGTTGAAACCTTTATAGACAACAATGAGCTTGATAAAGGAGACGAGATCTCTCCAGCACTCATCAAAGCCATTGAAGAGTCACATGCATCTATTGTCATCTTCTCAGAAAACTATGCTTCCTCAAAATGGTGCTTGAATGAGCTCAAAAAGATTCTAGAATGCAAGAAATATAAGGAACAAATTGTGATACCTGTTTTTTACAACATAGATCCATCACATGTGAGGAAGCAGACCGGGAGTTACAAGCAAGCCTTTGCAAAACATAAGCGAGATTTGAAGAACAATAATGACACGTTGCAGAAGTGGAAAGCTGCTCTCACCGAGGCAGCTAGCTTAGTAGGCTGGGACTCCGAAAATTTCAGGACTGAATCAGACTTCATTAAGGAGATTGTTGAAGATGTTTTGCGGAAACTCAACCTTAGATACCAATATGAAATGAAGGGGCTTGTTGGAATTGAGAAACATTATGAAGAAATTGAATCAAAACTGAAAATTGGGTCAAATGATGTTAGAGTCCTTGGAATATGGGGCATGGGTGGCATAGGAAAGACCACCCTTGCTAAGGCTTTATATGCTAAACTGTATTGCCAATTTGAAGGTCGTTGCTTCTTCAATGTAGTGGATGAACCAAAGAAGTATGGACATAATGGTGCACACAATAAATTTGTTTCTACATTGTTAGAGGAAGAAAATCATCATCCTGATGCACCCTACTTAGAAGCCCCTTTTTCTGTGAGAAGGATTGCACGTAAAAAAGTTTTCATTGTGTTTGATGGCGTGGAAACCTTTGATCAAATAGAAGATGTTATCCTAAAAATTGATGGGTTGGGATCGGGTAGTAGGGTGATTATTACATCTAGAGATAAGCACATTTTTAGTCGGTTCAGTAAATGTGAAATATATGAGGTTAAAGAATTGAACAAAGATGATTCTCTTCTGCTATTCAGTATGACGGCCTTCGTAGGAAAACATCTTGAAATTGGATATGAAGCTTTAGCAGAAAGTGTAATTGCTTATTGCAAAGGAAATCCTTTGGCTTTAAAAGTTTTAGGTGCAAATCTCCATTCAAGAGAAAAACAAGCATGGGAAAGTGAATTGGAAAAACTCAAAAAGATTCCCAATAGGAAAATTTATGAAGTATTAAAATTGAGTTATGATGACTTAGATCGTTGTCAGAAGGCCATTTTTCTAGATATTGCATGCTTTTTCAGAAGAGAATATATAGATTGCGCAAGGCTATTGGAAGCTTGTGAGTTCTTTCCAATAATTGGGTTAGAAGTCCTTCTAAATAAAGCTCTCATACAACTAATACCAGTTTGGGATGCCGGGTCGGAAACTGATATTATAGAAATGCATGATTTGTTACAAGAAATGGGACGGAATATTGTTAATCAAGAATCTATGGATCATGGAAAACGTAGTCGATTGTGGAAAGTTGAAGAAATATGtgatgtattaaaaaaaaacaagGGAACTGAAGCTGTGGAAGTTATAACATTTGATAATACGGAAGTTGAGGATCTTTACTTAAAGTCTGATTCTCTTAGAAATATGACAAACTTAAGATACCTTAGAATCTATAATGCATCTTATGGGACCACATGCAAGGTGTACTTTCCCGATGGTCTTGAGTGGCTTTCTGATAAATTGAGGTACCTTAAATGGGATGGATACTGCCTTGAGTCTTTGCCATCAACCTTTTGTGCTGAAATGCTTGTAGTGCTTGACATGCCTAATAGCAAGCTTAAAAAGCTATGGGATGGAGTTCAG 4137 0.3706 MSSEPSAISSSSSVVSSKNYDVFLSFRGEDTRRNFTSHLYDALSRKKVETFIDNNELEKGDEISQALIEAIEESHASIVIFSENYASSKWCLNELKKILECKKYKEQIVIPVFYNIDPSHVRKQTGSYKQAFAKHKRDLKNNNDTLQKWKAALTEAANLVGWDSENYRTESDFIKEIVEDVLRKLNLRYQYEIKGLVGIEKNYEQIESILKIGSNDVRVIGIWGMGGIGKTTLAKALYAKLYSQFEGRCFFNVVDEPNKYGHNGAHNRFVSTLLEEENLHPDAPYLESPFSVRRIARKKVFIVFDGVETFDQIEDVILKIDGLGLGSRVIITSRDKHIFSRFSKCEIYEVKELNKDDSLLLFSMTAFVGKHLEIGYEALAESVIAYCKGNPLALKVLGANLHSREKQAWENELEKLKKIPNRKIYDVLKLSYDDLDRCQKAIFLDIACIWREENKGFAIYLLDACDFYAKSGIEILLNKALIQVKSSWSYGLEVDRVEMHDLLKEMGREIVNKKSKDPGQRSRLWKTEEISYVLKKNKGTEAVEVITFDSTEVEDLYLKPDSFRKMTNLRYLKIYNASDGSTCNVYFPDGLEWLSDKLRYFRWDGYCLEYLPSTFCAEMLVELRMRNSKLKKLWDGVQNLVNLTIIGLESSKDLIEIPYLSSHQEQLLWSTEWIKGVRVLPVYAVKWKLELYGSSSSINSSSSEETVDEARSSNNENEGDQEQPSYPRKLCCSIGLLLGTPEAKPWDCDCTLFFSSIATHWILTLALGIREDTRRNFTSHLYDALSRKKVETFIDNNELDKGDEISPALIKAIEESHASIVIFSENYASSKWCLNELKKILECKKYKEQIVIPVFYNIDPSHVRKQTGSYKQAFAKHKRDLKNNNDTLQKWKAALTEAASLVGWDSENFRTESDFIKEIVEDVLRKLNLRYQYEMKGLVGIEKHYEEIESKLKIGSNDVRVLGIWGMGGIGKTTLAKALYAKLYCQFEGRCFFNVVDEPKKYGHNGAHNKFVSTLLEEENHHPDAPYLEAPFSVRRIARKKVFIVFDGVETFDQIEDVILKIDGLGSGSRVIITSRDKHIFSRFSKCEIYEVKELNKDDSLLLFSMTAFVGKHLEIGYEALAESVIAYCKGNPLALKVLGANLHSREKQAWESELEKLKKIPNRKIYEVLKLSYDDLDRCQKAIFLDIACFFRREYIDCARLLEACEFFPIIGLEVLLNKALIQLIPVWDAGSETDIIEMHDLLQEMGRNIVNQESMDHGKRSRLWKVEEICDVLKKNKGTEAVEVITFDNTEVEDLYLKSDSLRNMTNLRYLRIYNASYGTTCKVYFPDGLEWLSDKLRYLKWDGYCLESLPSTFCAEMLVVLDMPNSKLKKLWDGVQ 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01055 1379 PRINTS Disease resistance protein signature 638 654 - -
Tsu03g01055 1379 PRINTS Disease resistance protein signature 294 308 - -
Tsu03g01055 1379 PRINTS Disease resistance protein signature 219 234 - -
Tsu03g01055 1379 PRINTS Disease resistance protein signature 387 401 - -
Tsu03g01055 1379 SMART AAA_5 958 1095 IPR003593 -
Tsu03g01055 1379 SMART AAA_5 216 353 IPR003593 -
Tsu03g01055 1379 Coils Coil 399 419 - -
Tsu03g01055 1379 ProSiteProfiles TIR domain profile. 746 927 IPR000157 GO:0007165
Tsu03g01055 1379 Gene3D Ribonuclease Inhibitor 1257 1378 IPR032675 -
Tsu03g01055 1379 SUPERFAMILY "Winged helix" DNA-binding domain 1165 1276 IPR036390 -
Tsu03g01055 1379 Gene3D Ribonuclease Inhibitor 536 675 IPR032675 -
Tsu03g01055 1379 Pfam Leucine Rich Repeat 1361 1379 IPR011713 -
Tsu03g01055 1379 Pfam Leucine Rich Repeat 620 638 IPR011713 -
Tsu03g01055 1379 Gene3D - 769 925 IPR035897 -
Tsu03g01055 1379 Gene3D - 16 183 IPR035897 -
Tsu03g01055 1379 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 162 IPR035897 -
Tsu03g01055 1379 Coils Coil 1141 1161 - -
Tsu03g01055 1379 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 663 IPR044974 GO:0006952
Tsu03g01055 1379 SUPERFAMILY Toll/Interleukin receptor TIR domain 771 904 IPR035897 -
Tsu03g01055 1379 Gene3D - 1094 1178 IPR042197 -
Tsu03g01055 1379 Gene3D - 352 436 IPR042197 -
Tsu03g01055 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 446 IPR027417 -
Tsu03g01055 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 928 1188 IPR027417 -
Tsu03g01055 1379 SMART till_3 770 901 IPR000157 GO:0007165
Tsu03g01055 1379 SMART till_3 19 159 IPR000157 GO:0007165
Tsu03g01055 1379 SUPERFAMILY RNI-like 553 659 - -
Tsu03g01055 1379 Gene3D - 926 1090 IPR027417 -
Tsu03g01055 1379 Gene3D - 184 348 IPR027417 -
Tsu03g01055 1379 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 771 1376 - -
Tsu03g01055 1379 SUPERFAMILY RNI-like 1287 1375 - -
Tsu03g01055 1379 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 771 1376 IPR044974 GO:0006952
Tsu03g01055 1379 MobiDBLite consensus disorder prediction 695 725 - -
Tsu03g01055 1379 Pfam NB-ARC domain 201 422 IPR002182 GO:0043531
Tsu03g01055 1379 Pfam NB-ARC domain 942 1174 IPR002182 GO:0043531
Tsu03g01055 1379 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Tsu03g01055 1379 SUPERFAMILY "Winged helix" DNA-binding domain 423 535 IPR036390 -
Tsu03g01055 1379 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 663 - -
Tsu03g01055 1379 Pfam TIR domain 770 935 IPR000157 GO:0007165
Tsu03g01055 1379 Pfam TIR domain 19 191 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01055 Tsu-Chr3 9798653 9818886 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01055 16 662 WRKY Transcription Factor Family AT4G12020 31.667 1.60e-80 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01055 - - mtr:MTR_3g058790 1024.23