Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01050 ATGGCGGATTCCGACAACGATTCCGGCGGTCCACACGGCGGTGGATCGAACGCTCACGGCAGCGAGATGTCACCAAGAGAACAAGACCGATTCCTTCCTATAGCGAACGTAAGCAGAATCATGAAAAAAGCACTTCCGGCGAACGCAAAGATCTCAAAAGACGCAAAGGAAACAGTTCAGGAGTGTGTTTCAGAGTTCATCAGCTTCATCACCGGCGAAGCTTCCGACAAGTGCCAACGTGAGAAGCGTAAGACAATCAACGGTGACGATTTGCTTTGGGCGATGACGACGCTTGGATTTGAAGAATACGTGGAGCCTCTTAAAGGTTACCTTCAACGGTTTAGGGAGATGGAAGGAGAAAAGACTGTGGTGGCGCGTGATAAAGACGCGCCTCAAGGTTCTAATAGTGTTAACAACAGTTCCTTTGAGAGTGGTAGTTATGGTGGTGGAATCATGATGCATCAAGGACACGTGTATGGTTCCGGTGGATTTCAAGTTATTGGTAAGGGTGGGCCTGGTTATCCTGGGCCTGGATCTAATCCTGGTAGGCCCAGATAG 558 0.4946 MADSDNDSGGPHGGGSNAHGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGEKTVVARDKDAPQGSNSVNNSSFESGSYGGGIMMHQGHVYGSGGFQVIGKGGPGYPGPGSNPGRPR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01050 185 MobiDBLite consensus disorder prediction 123 142 - -
Tsu03g01050 185 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu03g01050 185 MobiDBLite consensus disorder prediction 164 185 - -
Tsu03g01050 185 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Tsu03g01050 185 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 154 - -
Tsu03g01050 185 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Tsu03g01050 185 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Tsu03g01050 185 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Tsu03g01050 185 Gene3D Histone, subunit A 18 143 IPR009072 GO:0046982
Tsu03g01050 185 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tsu03g01050 185 MobiDBLite consensus disorder prediction 1 29 - -
Tsu03g01050 185 SUPERFAMILY Histone-fold 28 131 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01050 Tsu-Chr3 9729453 9731694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01050 1 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.840 1.91e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu03g01050 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01050 K08065 - gmx:100813580 263.848