Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01046 aTGGGAACCTACATAGAAAATATTGTAGATGAGCATGAACACATTTTCCATAGCCAATATTCGCCCGTTCCGGTTCCTGACAACGTGACATTACCGGAATTCGTGCTTCAAAACGTAGAATTGTACGGTGATAAGGTTGCATTTGTTGATGCGGAGAGTGGAAAAGGGGTAACTTATAGCGAGGTTGCGAGGGATATACATAGATTTTCGAAGGCTTTAAGATCTCTTGGTTTGAGGAAAGGGAGTGTTGTGATTGTTGTACTTCCAAATGTAGTTGAGTATGCTATTATTGCTTTGGGGATTATGGATTCTGGTGGTGTGTTTTCAGGTGCAAATCCAGCTTCACATACTTCAGAAATCAAGAAACAAGCTGAATCTGCTGATGCCAAATTAATTGTCACAAATAGTACAACTCATGAAAAGGTGAAAAATCTAGGACTACCTGTGATTGTCCTAGGAGATGAACTTGTTGAAGATGCAATGAATTGGAACAAACTTCTAGAAGCAGCAGACAGGGCAGGCGACGATTTAATGAAAGAACCAATTAACCAAAACGATCTTTGCGCCATGCCATTCTCATCCGGCACAACAGGAATGTCAAAGGGTGTGATGCTTACACATAGAAATCTCGTCGCGAATCTTTGCTCTACACTCTTTAGTGTAGtgccagaaatgattggtaaaGTTACCACATTAGGGTTAATTCCATTTTTTCACATTTATGGTATCACTGGAATATGTTGTGCAACTATTAGAAACAAAGGGAAAGTTGTGGTCATGGGAAGATATGAtttgaaaacatttttgaaTGCTTTGATTACACATGAGGTCACATTTGCACCTATTGTTCCACCTATTATTCTTGGTTTGGTTAAAAATCCTATAGTTGATGAATTTGATCTTAGTAAACTTAAGCTTCAAGCTATTATGACTGCTGCTGCACCACTTGCACCTGAAATACTTACTTCCTTTCAACATAAGTTCCCTGGTGTTGTTGTCCAAGAGGCATATGGACTAACTGAGCATAGTTGCATCACACTTACATTTGCACAAAAAGGATTAGGAAGTACACATAAAAATTCAGTTGGTTTCATCCTTCCAAATTTGGAAGTCAAGTTTGTTGATCCTGAGACAGGTAAATCCCTCCCAAGGAACACACCAGGGGAACTTTGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAGCAAGTGGATGAGACTGCTCAGACTATTGACAAGAATGGATGGCTTCATACTGGTGATATTGGATTCatagatgatgaagaaaatgtttttattgtCGATCGTATTAAGGAGTTGATTAAATATAAAGGCTTTCAAGTTGCTCCTGCAGAGTTGGAGGCTATTTTGCTGTCTCATTCTTCAGTTGAAGATGCTGCTGTTGTACCATTACCAGATGAAGAGGCAGGGGAAATTCCAGCTGCAAGTGTTGTTTTGAGCAAAGGTGCAAAAGAGACTGAAGAAGATATGATGAACTATGTTGCTTCTAATGCTGCTCATTACAAAAAAGTGAGAGTGGTTCACTTTGTTGAAGCTATACCAAAATCACCTTCTGGTAAAATAATGAGAAGGCTTATCAAAGAGAAGATGGTGGAAAAGATTAAGGAAAATTCTCTAACAAAATCAAAcacttaa 1659 0.3743 MGTYIENIVDEHEHIFHSQYSPVPVPDNVTLPEFVLQNVELYGDKVAFVDAESGKGVTYSEVARDIHRFSKALRSLGLRKGSVVIVVLPNVVEYAIIALGIMDSGGVFSGANPASHTSEIKKQAESADAKLIVTNSTTHEKVKNLGLPVIVLGDELVEDAMNWNKLLEAADRAGDDLMKEPINQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFSVVPEMIGKVTTLGLIPFFHIYGITGICCATIRNKGKVVVMGRYDLKTFLNALITHEVTFAPIVPPIILGLVKNPIVDEFDLSKLKLQAIMTAAAPLAPEILTSFQHKFPGVVVQEAYGLTEHSCITLTFAQKGLGSTHKNSVGFILPNLEVKFVDPETGKSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSKGAKETEEDMMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLIKEKMVEKIKENSLTKSNT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01046 552 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Tsu03g01046 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 541 - -
Tsu03g01046 552 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Tsu03g01046 552 Gene3D - 440 543 IPR045851 -
Tsu03g01046 552 Pfam AMP-binding enzyme 37 444 IPR000873 -
Tsu03g01046 552 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 8 541 - -
Tsu03g01046 552 SUPERFAMILY Acetyl-CoA synthetase-like 14 541 - -
Tsu03g01046 552 Gene3D - 13 439 IPR042099 -
Tsu03g01046 552 CDD 4CL 25 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01046 Tsu-Chr3 9703676 9706739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01046 10 539 Monolignol Biosynthesis Gene Families AT1G62940 71.992 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01046 K01904 - gmx:100811418 971.844