Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01042 ATGTCTCCGAACAcgctcctcttcttcttcttcttcctcataCCAACGACACTCTCATCACAAAACACAACCTTCATCTTCTCTTCATTCACTCTCCGCAACATAACACTCCTCGGCGACTCCTTCCTCCGTCACGGCGTCGTCGGTCTAACTCGCTCCACCGCCGTCCCTGCTTCAAGCTCCGGCACTCTCCTTTACAACAACCCCATTTCTCATATACCCAAttcatctttctctttttccaCCAATTTCACTTTCTCTATCACTAACTCAAATCCTAACCCTCCTTCTTCTCCACTCAATGGCTTCTCATTTTTCCTCAACTCCACTACCTCTTTCATTTCCCTCAATTTTCACACTAACAATAATAACcaaattgattttcatttcAACAATAGTTTAATCCAAAACACCATTGATTTCAATTTCACAAATGGAAACTCGATAACTTCTTGGATCGATTATAAGGGCCCGTTTGATGGTCAGGATAAGAGACAAAATAATTTGAGTGTTTACTTAAGCTACGAAAATTCGAGTTTCTCGAAGCCCGAAAACCcggttttgagttttgatgtTGATCTTTCTGAGTATTTTAAGGAGATTGAGCTTATATATATCGGGTTTTCGGGTTCTGCTGAAGGAAGTACTGAGCTTCAACAGATCATGAATTGGAGCTTTGAGTCTTATCAGTTTCTAGtttttaatcaaactcaaaataaaaattcaacctTTCATCATGTAGGTTATCAATATGAGGATATTCCAGCTTCAAATTCAACAAGAAAAGGTCATGGAAAGAGATTTATGATTGGTTTTTGTGTTGCTATTGTGGGTCCtgcttttttctttgttctgcTATTGGTTTTAGGGTATGTTTCTTTTAGGAAATGGAATAGTTTAAAGAAGCTTAAGAAGAGTGAAAGTTCTTTAGGGTGTCCTAAAGAGTTTGGTTACAAGGAATTGAAGTTTGCTACAAAAGGGTTTCATAGTTCAAGGATAATTGGAAATGGTTCATTTGGGACAGTTTATAAGGCTTTGTTTGTTTCTTCTGGTACAGTTGCTGCTGTTAAAAGATCAAGACATTCACACGAAGGGAAAACCGAGTTTTTATCCGAGTTATCGATTATAGCTGGTTTAAGGCACAAGAATTTGGTTCAACTTTTAGGTTGGTGTGTTGAGAAAAGTGAATTGTTACTTGTTTATGAGTTTATGGTTAATGGTAGTTTAGATAAGTTGCTTTATAAGGAATTTGAGTGTGGTATTTTGTTAAGTTGGATTCAAAGAGTTAACATTGTTGCTGGTTTAGCTTCTGTTTTAGCTTATTTGCATCAAGAATGTGAACAAAGAGTGATTCATCGAGATATTAAGACGGCGAATATATTACTAGATGCAAATTTGAATCCAAGGTTAGGTGATTTTGGATTGGCAAAGCTTATGGATCATGATATGAGTCCGGTTTCGACTTTAACAGCCGGAACAATGGGATACCTAGCTCCTGAGTATCTTCAATACGGTAAAGCAACCGATAAAACCGATGTTTTTAGCTTCGGAGTAGTTATTCTTGAAGTTGCTTGTGGTAGAAGGCCAATTGAGAAAGAGGGTCAAGATATGGTTAATTTAGTTGATTTTGTTTGGGGACTTTATTCACAAGGAAAGTTAATTGAAGCTGTTGATAAGAGATTGAATGGCGAATTCGACGAAGATGAAATGAAGAAGATGTTATTGTTAGGATTGAGTTGTGCAAATCCAAATAGTGATGAAAGACCTTCAATGAGAAGAGTTTTGCAAATTCTTAACAATGAAGCTTTGCCTCTTGTTGTGCCTAAAGTGAAACCATGTCTTAGTTTCTCTTCTGGATTGTTAttgagttttgatgagattGTTTCAGATTTTGATGAAAGGTTTTGTTCTAATCAATATAGTTGCAAGATACAAATTGAACCAAGTTGTTGA 1953 0.3425 MSPNTLLFFFFFLIPTTLSSQNTTFIFSSFTLRNITLLGDSFLRHGVVGLTRSTAVPASSSGTLLYNNPISHIPNSSFSFSTNFTFSITNSNPNPPSSPLNGFSFFLNSTTSFISLNFHTNNNNQIDFHFNNSLIQNTIDFNFTNGNSITSWIDYKGPFDGQDKRQNNLSVYLSYENSSFSKPENPVLSFDVDLSEYFKEIELIYIGFSGSAEGSTELQQIMNWSFESYQFLVFNQTQNKNSTFHHVGYQYEDIPASNSTRKGHGKRFMIGFCVAIVGPAFFFVLLLVLGYVSFRKWNSLKKLKKSESSLGCPKEFGYKELKFATKGFHSSRIIGNGSFGTVYKALFVSSGTVAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLLGWCVEKSELLLVYEFMVNGSLDKLLYKEFECGILLSWIQRVNIVAGLASVLAYLHQECEQRVIHRDIKTANILLDANLNPRLGDFGLAKLMDHDMSPVSTLTAGTMGYLAPEYLQYGKATDKTDVFSFGVVILEVACGRRPIEKEGQDMVNLVDFVWGLYSQGKLIEAVDKRLNGEFDEDEMKKMLLLGLSCANPNSDERPSMRRVLQILNNEALPLVVPKVKPCLSFSSGLLLSFDEIVSDFDERFCSNQYSCKIQIEPSC 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01042 650 Gene3D Phosphorylase Kinase; domain 1 292 403 - -
Tsu03g01042 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Tsu03g01042 650 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.7-RELATED 21 629 - -
Tsu03g01042 650 PANTHER - 21 629 - -
Tsu03g01042 650 Gene3D Transferase(Phosphotransferase) domain 1 404 604 - -
Tsu03g01042 650 Pfam Protein kinase domain 328 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01042 650 Pfam Legume lectin domain 138 230 IPR001220 GO:0030246
Tsu03g01042 650 Pfam Legume lectin domain 23 112 IPR001220 GO:0030246
Tsu03g01042 650 Gene3D - 20 229 - -
Tsu03g01042 650 CDD STKc_IRAK 334 600 - -
Tsu03g01042 650 SUPERFAMILY Protein kinase-like (PK-like) 312 621 IPR011009 -
Tsu03g01042 650 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
Tsu03g01042 650 SMART serkin_6 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01042 650 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 232 IPR013320 -
Tsu03g01042 650 ProSiteProfiles Protein kinase domain profile. 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01042 Tsu-Chr3 9669479 9671431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01042 6 633 Receptor kinase-like Gene Family AT5G55830 53.353 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu03g01042 Pkinase 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01042 - - gmx:100808744 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01042 03 9669479 9671431 Tsu05g04040 05 51205034 51207094 PCT