Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01039 ATGTTTAACACTGCTGAGACAACCCACACCACCATTTTGCTCCTCTCTTCACATTCCATTTTTGCGATTGGAACAACTCTGTCCACGAACTGTGGCGAGTCACGTGAGAAGAATGGGAAGTTTAAATCCGAGAAGCAAAGCTGTGATCCCTATTTACGTATATGTCAACATTGTTTATTCAATGAAAATAATGTTATGCGTCGTGGGCCAGACggacaaaaaaatttatgtaatGCATGCGGCCTCTTTTGGAAGAAAACGGGAACTCTTAAAGATCTCGGTATGGGACGAAGATATCTTTCTGTTGATCAAAGTGATCTGGAGCCTCTTATTGATGTCAACATTACCGGTCTTGAAGGAGAATTACCTGTCATCCAAAATGAACAAGGTATTTCTGAAGATCCTTTGAAGGCCATTGCCACTGAAGGTTCGAATAATCATGCATTATACCCCCATCATGAGGAATTGCCTGAATCTTTAGAACACCTAACAAACACTCTAGGAATCGATCATTCTTCACAAAATGATGACGAGCAGAGCTACACGTTTTCAGAGGCTCTGGTGAAGGTAGAGTCATTGTTAGCATTTCACGATATGGACTTTCCATCTACCTCGGAGGTAGACCACACCTCGGTTGTTGGCATTTCTCGGTAA 654 0.4128 MFNTAETTHTTILLLSSHSIFAIGTTLSTNCGESREKNGKFKSEKQSCDPYLRICQHCLFNENNVMRRGPDGQKNLCNACGLFWKKTGTLKDLGMGRRYLSVDQSDLEPLIDVNITGLEGELPVIQNEQGISEDPLKAIATEGSNNHALYPHHEELPESLEHLTNTLGIDHSSQNDDEQSYTFSEALVKVESLLAFHDMDFPSTSEVDHTSVVGISR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01039 217 SMART GATA_3 49 105 IPR000679 GO:0006355|GO:0043565
Tsu03g01039 217 CDD ZnF_GATA 54 97 IPR000679 GO:0006355|GO:0043565
Tsu03g01039 217 Gene3D - 51 104 IPR013088 GO:0006355|GO:0008270
Tsu03g01039 217 Pfam GATA zinc finger 55 89 IPR000679 GO:0006355|GO:0043565
Tsu03g01039 217 PANTHER GATA TRANSCRIPTION FACTOR 28 38 192 IPR045280 GO:0006355
Tsu03g01039 217 ProSiteProfiles GATA-type zinc finger domain profile. 55 106 IPR000679 GO:0006355|GO:0043565
Tsu03g01039 217 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 38 192 - -
Tsu03g01039 217 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 50 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01039 Tsu-Chr3 9633134 9637078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01039 55 93 Tify Gene Family AT4G24470 56.098 3.03e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu03g01039 GATA 8.5e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01039 - - gmx:100801328 150.214