Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01030 ATGGAAATTGGGATAGAGGATGAGATTGTGGACATGTCAATGGTACCTCCATCAAGTAGGAGCAATGAATTTGGTCAAAACAAGGAGTTTATGTCTAAGGATGCATACCTTAGGAATAGGAATAGGTGCTCAGAGATTGATATAGAAGTTGAAGATTTAAGTATCAACCAAAATGGCCCCCTCCCTATATTTTTGAAGTTTGAAGATGTAGAGTTTAAGGTGAGAAACAGCCAAGCAAGCTCTAATATGAAGACAATGGTGTCAAAGACAGCTACACCAAACACTATGGAAGAAGATAGATACAAGAGAATATTGAAGGGTATTACTGGAAGCATTGGCCCTGGTGAAATTCTTGCTCTGATGGGTCCTTCTGGCAGTGGAAAAACAACTTTGCTGAGAGTTATAGGAGGAAGATTGGTTGACAATGTAAAAGGAAAAATAACTTACAATGATGTTAAATATACTCCAGCTGTCAAGAGAAGGATTGGTTTTGTGACACAAGATGATATACTTTTCCCACAATTAACAGTGGAAGAAACATTAATCTTTTCAGCATTCTTAAGGTTACCAACAAGTATGAACAAGCAACAAAAATATGCAAAAGTGGAAAAAACTTTGAAGGAGCTAGGTCTTGAAagATGCCGCTACACGAAAATATTTGGAGTATCAGGAGGGGAAAGGAAAAGAACAAGCATAGGCTATGAAATTCTTGTTGATCCTTCATTGCTGCTACTTGATGAACCAACCTCAGGCCTTGATTCTACATCAGCAAACAAACTACTTGTCACACTTCAAGGACTTGCTAAgGCTGGAAGGACTATAATCACAACAATACATCAGCCATCAAGCAGAATCTTTCACATGTTTGACAAACTTCTTTTGATATCAGAAGGCTGTCCCATTTACTATGGTACAGCTAGAGAAACAATGGAGTACTTTTCGTCGTTGAGGTTCAGTCCGGAAATAGCCATGAATCCGGCAGAGTTCTTGCTTGACTTGGCAACTGGTGAAGTGAATGACATAAGTGTTCCAACAGATATTTTTCATGATCAAGAATCTGCTCATGACTCTTCCAAAGCTGTTATTAAATATCTACAAGTCAAGTACAAAACTCTACTTGAGCCAAAAGCAAAAGAGAATCTTAGAGGAGTAAACATACCAGAACATCTTCAAGTGGCCATTCAAGTTAAGAAAGAGTGGACATTAAGTTGGTTGGACCAATTTATGATTCTTTCAAGGAGAACATTTAAAGCAAGATCCAAGGACTATTTTGACAAGTTAAGACTATTTCAAGCAATTGGAGTAGCACTTTTGCTGGGGCTACTTTGGTGGAAATCTTCAAACAATACAGAAGCTCAACTCAGAGATCAGGTTGGTTTAGCATTCTACATATGTATATTCTGGACATCTACATGCCTTTTTGGAGCAGTCTATGTGTTCCCATTTGAAAAGTACTACTTGataaaagaaaggaaagctGATATGTATAGATTAAGTGTATACTATGTATGCAGCACTCTATGTGACATGGTGGCACATGTTTTATATCCTACTTTTTTCTTGATTATTGTCTACTTCATGGCTGGATTTAAGAGGACTGTTGGTTGCTTCTTCCTCACGTTATTTGTTGTTCTACTAATAGCGGTAACAAGTCAAGGTGCAGGAGAATTGTTTGGAGCTGCAGTTATGAGTATTAAAAGATCAGGGATGGTTGCTACTTTAGTACTCATGTTGTTCCTCCTTACTGGTGGCTACTATGTTCAGCACATACCAAAATTCATGCAATGGTTAAAGTATATTTCATTCATGTACTATGGTTTTAGACTACTTCTAAAGGTGCAATATTCAGGAGATGAATTATATGATTGTGAAAGTAGAGGAGGGTGTAGGCCTTTACAAAGTTCACCAACATTTGCCACTGTAAACTTGAAAGGTGGCTTAAAAGAAGTTTGGGTTATGGTAGCTATGGCTATATGTTTCCGTTTGTTAGCTTACTTTTGTCTCCGTAGAAAAATTGATGTCTAA 2025 0.3723 MEIGIEDEIVDMSMVPPSSRSNEFGQNKEFMSKDAYLRNRNRCSEIDIEVEDLSINQNGPLPIFLKFEDVEFKVRNSQASSNMKTMVSKTATPNTMEEDRYKRILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLVDNVKGKITYNDVKYTPAVKRRIGFVTQDDILFPQLTVEETLIFSAFLRLPTSMNKQQKYAKVEKTLKELGLERCRYTKIFGVSGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLVTLQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGCPIYYGTARETMEYFSSLRFSPEIAMNPAEFLLDLATGEVNDISVPTDIFHDQESAHDSSKAVIKYLQVKYKTLLEPKAKENLRGVNIPEHLQVAIQVKKEWTLSWLDQFMILSRRTFKARSKDYFDKLRLFQAIGVALLLGLLWWKSSNNTEAQLRDQVGLAFYICIFWTSTCLFGAVYVFPFEKYYLIKERKADMYRLSVYYVCSTLCDMVAHVLYPTFFLIIVYFMAGFKRTVGCFFLTLFVVLLIAVTSQGAGELFGAAVMSIKRSGMVATLVLMLFLLTGGYYVQHIPKFMQWLKYISFMYYGFRLLLKVQYSGDELYDCESRGGCRPLQSSPTFATVNLKGGLKEVWVMVAMAICFRLLAYFCLRRKIDV 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01030 674 Pfam ABC-2 type transporter 279 339 IPR043926 GO:0140359
Tsu03g01030 674 Gene3D - 92 317 IPR027417 -
Tsu03g01030 674 SMART AAA_5 114 299 IPR003593 -
Tsu03g01030 674 Pfam ABC transporter 105 250 IPR003439 GO:0005524
Tsu03g01030 674 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 671 - -
Tsu03g01030 674 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 322 IPR003439 GO:0005524
Tsu03g01030 674 Pfam ABC-2 type transporter 407 615 IPR013525 GO:0016020|GO:0140359
Tsu03g01030 674 CDD ABCG_EPDR 101 304 - -
Tsu03g01030 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 314 IPR027417 -
Tsu03g01030 674 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 4 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01030 Tsu-Chr3 9538108 9542542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01030 103 308 Calmodulin-binding Proteins AT2G36910 27.830 1.06e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01030 K05681 - gmx:100806094 1092.8