Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01027 ATGgtatcattttcttcaaattatgcAATAGGAGAAAACAGCATGGTGCAAAACATGTCtcaaccaccaccaacaacTACCTTAACAACATCTCAAGTTGTTCAACCTTCATTTTTGACTAGAATGGCTATGAGAATATCAAGATCAAGATGcttcatttttttaagaagagTATTTCATTACCAAAATGGACCAAGATCTAATCTTGGTTCTAATCCTTTTAATTCAAGTACTTGGATGATGTTGGAATTGATTGCTTTGTTGGTTCAGATAATAAGCACAACATTTACTTTGACAATTTCAAAGAATGAGAAACCTGTTTGGCCTATGAGGGTGTGGATTGTTGGTTATGACATTGGATGtgttcttaatttgttgttactttATGGTCGCTATCATCAAATTAATTTCATTCAAGGTGATTCTGATATTgaacaacaaataaccaatgAAGAAAACAGTGTATATAGGAGCACACATTTGATGAGCAAATGTAGAAGTTCACTAGAGCTTTTTTTTGCAATATGGTTTGTGATGGGAAATGTTTGGTCATTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTTCAAGTTCTATGCATAATCCTTCTTGTTTGGAATGCAATTTGTTACTCTTtcccttttcttctctttttgttACTTTGTTGTTGTGTGCCACTCGTTAGTACACTCCTTGGTTACAACATGAACATTGGCTCCTCTTCTAAAGGTGCATCTGATGATCAAATCTCACAACTTCTATCTTGGAAATATAAAGGGGCTCATTCCAACAACTTGGATCTTAACAATGACTCTCAATGTAGTGAAAGATTGATCCGCGAAGAGCCGGAATGTTGCATATGCTTGGCCAAGTACAAAGACAAAGAAGAAGTTAGGCAATTGCCATGTTCCCATATGTTTCATCTAAAATGTGTAGATCAATGGCTCAAAATTATATCATGTTGTCCTCTTTGCAAACAAGGATTACAAAGGTAG 1002 0.3144 MVSFSSNYAIGENSMVQNMSQPPPTTTLTTSQVVQPSFLTRMAMRISRSRCFIFLRRVFHYQNGPRSNLGSNPFNSSTWMMLELIALLVQIISTTFTLTISKNEKPVWPMRVWIVGYDIGCVLNLLLLYGRYHQINFIQGDSDIEQQITNEENSVYRSTHLMSKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQVLCIILLVWNAICYSFPFLLFLLLCCCVPLVSTLLGYNMNIGSSSKGASDDQISQLLSWKYKGAHSNNLDLNNDSQCSERLIREEPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLKIISCCPLCKQGLQR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01027 333 CDD RING-H2_RNF111_like 285 328 - -
Tsu03g01027 333 SUPERFAMILY RING/U-box 278 331 - -
Tsu03g01027 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 332 IPR013083 -
Tsu03g01027 333 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 332 - -
Tsu03g01027 333 Pfam RING-like zinc finger 286 314 IPR001841 -
Tsu03g01027 333 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 17 332 - -
Tsu03g01027 333 SMART ring_2 287 327 IPR001841 -
Tsu03g01027 333 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01027 Tsu-Chr3 9512849 9515635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01027 38 331 C3H Transcription Factor Family AT4G26580 67.667 7.49e-138 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01027 - - gmx:100818715 521.546