Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01025 ATGCTACCTGGTTTGCATTACAATATCAATGATCTGTTTCAAGAAGCTAAGAAAAGATGGCTCAAACCTACAGAAGTGTTTTACATTTTGCAGAATCACGACACGTGCCAGTTCACTGATATGCGCCTTAAACAGCCTCGTGGTGGAACTGTtcatttgtttaataaaaaagtcGTGCCTTTATTTCCAAAAGATGGTCATAATTGGCGGAAGAAACCAGATGGAATAACTGCGGCAGAAACACATAAACGGCTTAAGGTTGGAAATGTTGAAGCCCTAAACTGTTACTATGCAGATGGAGAGAAGAAGCGTAGTTTGCATAGGCGAAGCTATTGGATGTTGAACCCGGAATATGAGCATGTTGTTCTCGTGCATTACAGAGATACAAAGATCTCTGCTGCAGACAAAACACAATCTACCCCAGATACTTCGACTCAGCCTGCTGGAGATGTTTCAAAAGGACCATCGAAAGGAGAGCCTTCAAAAGCTGCAGTCGAAACAGACACTACAACGGAAGTTTTGGTAGAAGAGAATCCACCCAAAGACAATCCAAATGGAGAAACTTCTAAGGATGATGCTTCAAGTATGGAATTTGTTCACACAAATTCGACTTCTCAAGCAAATCCAGACAACTCCAATGaacaaatggattttgatgatGCATTTTTGCCAGAAGCAGAAGAAGGAGGGTCTGAAATTTTACCAGAATCTTTGACATCGAAACTCTCAGCAAGCATAGGAATGTCTGAAGGGGAATTTGATAATATGAGAAACTCACAACCAGATCTTGCTCTTCAATTGCTGATGGATAAAAAATGTGAACTTGCTCAGAATTCGAGTAGTGATATTGGGGGTACTTCGAATAGATCTGATGCAGGAATTCGCCAAAGACAGGACTCATTATTACACAAATTTCATTCAGAATATCTAAATGGCGATGTGCTCAAATCAATCGAAGAAAATGCTAATGCTGCTTTTGCtcataaaaatttcttgaaccatTTGCATAATCTTCGGATTGATGAAGCAACCTTGAGTAAAGTTATCCAGCTTGAGTCAATTATGGATAAAAAATGCTAA 1080 0.3796 MLPGLHYNINDLFQEAKKRWLKPTEVFYILQNHDTCQFTDMRLKQPRGGTVHLFNKKVVPLFPKDGHNWRKKPDGITAAETHKRLKVGNVEALNCYYADGEKKRSLHRRSYWMLNPEYEHVVLVHYRDTKISAADKTQSTPDTSTQPAGDVSKGPSKGEPSKAAVETDTTTEVLVEENPPKDNPNGETSKDDASSMEFVHTNSTSQANPDNSNEQMDFDDAFLPEAEEGGSEILPESLTSKLSASIGMSEGEFDNMRNSQPDLALQLLMDKKCELAQNSSSDIGGTSNRSDAGIRQRQDSLLHKFHSEYLNGDVLKSIEENANAAFAHKNFLNHLHNLRIDEATLSKVIQLESIMDKKC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01025 359 MobiDBLite consensus disorder prediction 189 215 - -
Tsu03g01025 359 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Tsu03g01025 359 MobiDBLite consensus disorder prediction 133 217 - -
Tsu03g01025 359 MobiDBLite consensus disorder prediction 133 151 - -
Tsu03g01025 359 PANTHER CALMODULIN-BINDING PROTEIN 1 155 - -
Tsu03g01025 359 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 155 - -
Tsu03g01025 359 SMART CG_1_2 12 130 IPR005559 GO:0003677
Tsu03g01025 359 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01025 Tsu-Chr3 9492171 9495471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01025 5 198 CAMTA Transcription Factor Family AT1G67310 46.500 4.50e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01025 K21596 - gmx:100791430 197.593