Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01011 ATGTTTTTGATATATGATGCAGAGATAAAGGACAAAGTGATAAAGAGCAATGAGGATTTTGTTTGGTCACTTGAGGTTCCACTGTCTGGAAAATTCATTATTGATGTTGATTTCCTTGATTTGAAGATTGCATCCCCAGATGGTGGAGAACCTTGCTCCATATGGGGTGGTGAAGGATTTACTCAAGAGAGATCAAATGCAAGAGCTTTAGGGTCTCTTGGTATAATGCTAAGAGAAAGCATTCACACTGATATCACCATCAATACCTCTGATGGAAGTATAGGAGTTCATAGAGCTGTTCTTTCGTCCCGGTCACCTGTCTTCCGGAGCATGTTTTCGCACGATCTTAAGGAGAAAGAGTTGTCAACCATAAACATCACAGACATGACAATTGAAACATGCCAAGCTTTTTTCAATTATCTTTACGGGATCATCAAAAACGAAGAATTTATGACACATAGACTGGCCCTTCTGCATGCAGCCGACAAGTACGACATATCTGACTTGAGAGAAGCCATCCATGAGAGTCTGCTAGAAGATATTGATACTAAAAATGTACTTGAGAGGCTCCAAAATGCATCACTATATCGGTTGACGAAACTGAAGACAAGTTGTATTCAGTACCTTGTTAAATTTggtaaaatatttgaaattcgGGATGATTTCAATACCTTCCTCCAAAATGCGGATAGGGATCTCATTACTGAAGTCTTCGCCGAAATTATTGGTGTCTGGAAAGGATATTGA 747 0.3855 MFLIYDAEIKDKVIKSNEDFVWSLEVPLSGKFIIDVDFLDLKIASPDGGEPCSIWGGEGFTQERSNARALGSLGIMLRESIHTDITINTSDGSIGVHRAVLSSRSPVFRSMFSHDLKEKELSTINITDMTIETCQAFFNYLYGIIKNEEFMTHRLALLHAADKYDISDLREAIHESLLEDIDTKNVLERLQNASLYRLTKLKTSCIQYLVKFGKIFEIRDDFNTFLQNADRDLITEVFAEIIGVWKGY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01011 248 Pfam BTB/POZ domain 79 179 IPR000210 GO:0005515
Tsu03g01011 248 PANTHER OS08G0495500 PROTEIN-RELATED 5 248 IPR044714 -
Tsu03g01011 248 SUPERFAMILY POZ domain 68 179 IPR011333 -
Tsu03g01011 248 ProSiteProfiles BTB domain profile. 83 142 IPR000210 GO:0005515
Tsu03g01011 248 CDD BTB_POZ_ZBTB_KLHL-like 82 164 - -
Tsu03g01011 248 PANTHER OS08G0495500 PROTEIN 5 248 - -
Tsu03g01011 248 Gene3D Potassium Channel Kv1.1; Chain A 61 211 IPR011333 -
Tsu03g01011 248 SMART BTB_4 83 181 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01011 Tsu-Chr3 9372283 9375526 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu03g01011 BTB 1.8e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01011 K10523 - gmx:100790186 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01011 03 9372283 9375526 Tsu03g01011 03 9372283 9375526 ECH
Tsu03g01011 03 9372283 9375526 Tsu05g02731 05 37346189 37352202 PCT