Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01004 ATGACGGCGACACTCACTCTCGCCGGTCTAACCGCCGTTCGGCCACTCCGATACGACGACAACTGTTCCACTTCCACCTCCACAAGGTTCATCCATAAACCTAGTTTCAATTGCTCAAACCGCCGCCGGATTTCAATCCGAGCAGTAGCAGCGGTAGTCGAGACACGGCGGCCGGCGACAAGTCTCTACGAAGTTCTACGTTTAAAGCCTGGTGCATCTCCTACTGAGATTAAATCAGCTTACCGGAGTCTGGCGAAGGTTTACCATCCCGACGCGGCGGCGAAGCGGTTGCCGGAGTGTAGTGATGGAGACTTCATCGAGATTCGTAACGCCTACGAGACGCTTTCGGATCCATCTGCCAGAGCTGTTTACGATATGTCACTGATGGCGGCACACGGCGGAAGAAATCGGCGGTTTACGGCTCCGATGACACAAAAACGGCATTCAGGATATTATAGTAATCGGAGATGGGAAACGGACCAATGCTGGTAG 492 0.5346 MTATLTLAGLTAVRPLRYDDNCSTSTSTRFIHKPSFNCSNRRRISIRAVAAVVETRRPATSLYEVLRLKPGASPTEIKSAYRSLAKVYHPDAAAKRLPECSDGDFIEIRNAYETLSDPSARAVYDMSLMAAHGGRNRRFTAPMTQKRHSGYYSNRRWETDQCW 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01004 163 ProSiteProfiles dnaJ domain profile. 61 128 IPR001623 -
Tsu03g01004 163 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Tsu03g01004 163 SUPERFAMILY Chaperone J-domain 58 134 IPR036869 -
Tsu03g01004 163 CDD DnaJ 63 117 IPR001623 -
Tsu03g01004 163 PRINTS DnaJ domain signature 100 120 IPR001623 -
Tsu03g01004 163 PRINTS DnaJ domain signature 81 96 IPR001623 -
Tsu03g01004 163 PRINTS DnaJ domain signature 63 81 IPR001623 -
Tsu03g01004 163 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 1 163 - -
Tsu03g01004 163 Pfam DnaJ domain 62 125 IPR001623 -
Tsu03g01004 163 SMART dnaj_3 60 120 IPR001623 -
Tsu03g01004 163 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 1 163 - -
Tsu03g01004 163 Gene3D DnaJ domain 49 148 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01004 Tsu-Chr3 9322850 9323458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01004 63 125 C2H2 Transcription Factor Family AT1G74250 48.485 7.81e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01004 - - gmx:100778445 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01004 03 9322850 9323458 Tsu03g01004 03 9322850 9323458 ECH