Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01000 ATGATGGAGTGCAACAAAGATGAGGCAGTTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCTGAAAGGGAATATATCAGTTCAAAGAAGTTTGCTCTCAAGGCTCAAAATTTGTATCCTAATTTGGAGGATATTTCCCAGTTTTTGACTACTATTGATATTTATATATCTGCCGAGAACAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAAGAGACTGTTAGAAAACAATACAGGAAGCTGGCTATCACCCTTCAACCTGACAAAAACAAGTCTTTAGGTGCAGATGGTGCATTTAAGCTGGTTTCAAAGGCATGGAGTTTGTTATCAGATAAGACCAAAAGACTAGAATATAACCAGAAGAGGAGTTTCAAAAAAGCTGAAACCTTTTGGACTCTTTGTAATAAGTGCAGGGCACATTATGAATATCTCAGAGTTTATTTGAATCACAAACTTTTATGTGGCAACTGTAATGAAGCTTTTGTGGCTGTAGAGAGGGCTCCTCTTCCCAATGTTTTTAAGCCATCAAATTTGTCCTCCCATCAACAGCACCAGAATTCTACCAAGCTCTCCATCCATTTCTTCAAGCTCATCCTCCAAACTAATCTTCAAAGACTTAAAATACCAAACGAGTTTACAAGGAGATATGAAGTGAATCTATTAAATCCAGTGTTGATCAATCCTCCTGATGGCACTAAATGGAAAGTTTATTGGAAAAATATCAATGGTGAGATTTGGTTTCAAAAGGGTTGGAAAGATTTTACTCAAAATTACTCTCTAGGATATGGGTGTTTGGTGGTGTTTAAATATAAAGAAGGAACTTCAAAATTCGATGTAATCATACTTGACCAGAGTGCAGTGGAAATAGACTATGGTCTTTCATGTAATGTTgctgatagtgatgatgaatcaGTTCAAATTTTGGATGAAAGGGACAATAGTATTGATCATAGTGATGATGCATCAGTTGAGATTTTGGATGAATATCTTAAACCGAAGAAGAATCGGCAAAAATCACCATTAGGTTCTTTTCAACCGCATAAGAAAGTCAGAAGTGATACCGAGAACATTACTAAAAGAACTTCATCCTTGAATTGGCCAAAGGTACCTAAAGCTCAGGAAGTAGCTGCAAAATTCATCTCAAACAATCCTTTTTTCACAATTCACATAAAGCCTTGTCATGTGGTAAAAAGTCAGCTGAGTTTACCAAATTTAAAGGGGGTTATTGAGAACAAAGAGAAGTATGTGATGTTGCAGATTGGAAAAAGATCATGGAATGTGAAACTGCTCCACCATTGTCATGGCAATAACAATTTGAGTTACCTATCGGCGGGTTGGTCCTTGTTTGCAAGTGAAAGTGGACTGAAACCAGGAGATGTTTGTGTCTTTGAACTAATAAACAAGTCTGAGTTAGTTTTTAAAGTTCATGTATTCTAA 1464 0.362 MMECNKDEAVRAKEIAERKFSEREYISSKKFALKAQNLYPNLEDISQFLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLAITLQPDKNKSLGADGAFKLVSKAWSLLSDKTKRLEYNQKRSFKKAETFWTLCNKCRAHYEYLRVYLNHKLLCGNCNEAFVAVERAPLPNVFKPSNLSSHQQHQNSTKLSIHFFKLILQTNLQRLKIPNEFTRRYEVNLLNPVLINPPDGTKWKVYWKNINGEIWFQKGWKDFTQNYSLGYGCLVVFKYKEGTSKFDVIILDQSAVEIDYGLSCNVADSDDESVQILDERDNSIDHSDDASVEILDEYLKPKKNRQKSPLGSFQPHKKVRSDTENITKRTSSLNWPKVPKAQEVAAKFISNNPFFTIHIKPCHVVKSQLSLPNLKGVIENKEKYVMLQIGKRSWNVKLLHHCHGNNNLSYLSAGWSLFASESGLKPGDVCVFELINKSELVFKVHVF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01000 487 PANTHER BNAC03G44070D PROTEIN 133 312 - -
Tsu03g01000 487 PRINTS DnaJ domain signature 87 102 IPR001623 -
Tsu03g01000 487 PRINTS DnaJ domain signature 103 123 IPR001623 -
Tsu03g01000 487 PRINTS DnaJ domain signature 69 87 IPR001623 -
Tsu03g01000 487 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Tsu03g01000 487 MobiDBLite consensus disorder prediction 344 367 - -
Tsu03g01000 487 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 2 134 - -
Tsu03g01000 487 ProSiteProfiles B3 DNA-binding domain profile. 394 487 IPR003340 GO:0003677
Tsu03g01000 487 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Tsu03g01000 487 Gene3D DnaJ domain 55 148 IPR036869 -
Tsu03g01000 487 CDD DnaJ 67 120 IPR001623 -
Tsu03g01000 487 CDD B3_DNA 202 292 IPR003340 GO:0003677
Tsu03g01000 487 Pfam DnaJ domain 67 128 IPR001623 -
Tsu03g01000 487 PANTHER BNAC03G44070D PROTEIN 2 134 - -
Tsu03g01000 487 CDD B3_DNA 393 487 IPR003340 GO:0003677
Tsu03g01000 487 SUPERFAMILY DNA-binding pseudobarrel domain 202 300 IPR015300 -
Tsu03g01000 487 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 133 312 - -
Tsu03g01000 487 SMART B3_2 203 294 IPR003340 GO:0003677
Tsu03g01000 487 SMART B3_2 394 485 IPR003340 GO:0003677
Tsu03g01000 487 Pfam B3 DNA binding domain 406 486 IPR003340 GO:0003677
Tsu03g01000 487 Pfam B3 DNA binding domain 210 288 IPR003340 GO:0003677
Tsu03g01000 487 Gene3D - 195 295 IPR015300 -
Tsu03g01000 487 SUPERFAMILY DNA-binding pseudobarrel domain 390 486 IPR015300 -
Tsu03g01000 487 SMART dnaj_3 66 123 IPR001623 -
Tsu03g01000 487 SUPERFAMILY Chaperone J-domain 60 131 IPR036869 -
Tsu03g01000 487 ProSiteProfiles B3 DNA-binding domain profile. 200 294 IPR003340 GO:0003677
Tsu03g01000 487 Gene3D - 377 487 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01000 Tsu-Chr3 9272949 9274977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01000 5 179 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.000 2.13e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu03g01000 B3 4.6e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01000 - - mtr:MTR_3g091040 333.954