Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00999 ATGGCTAGAACAAATTGTACGAAGCTTTCAATCCATTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGACTTAAAATACCAAATAAGTTTACAAAGAGTCATGAAGTTGGTCTATCAAATCCAGTGTTGATCAAGCCTCCTGATGACACTAAATGGAAAGTTTATTGGAAAAAAGTCAGTGGTGAGATTTGGTTTGAAAAGGGTTGGAAAGATTTTACTCAAAATTACTCTCTAGGACATGGCTGTTTGGTGTTGTTTGATTATAAAGAAGGAACTTCAAAATTTGATGTACTCATACTTGGCCAGAATGCAGTAGAAATAGATTATGATCCTTCATCTTACACTTATGATGATGAAAATGACAATGTTggtgatagtgatgatgaatcaGTTCAAATTTTGGATCAAAAGGACAATATTATTGATCatagtgatgatgaatcaaTCGAGATTTTGGATGAATGGCTTAAACGGAAGAAGAACAAACAAAGGTTACCAATAGGTCGATCTCCTCGACCACATAAGAAAGTTAGAGGTGCGATTGAGAAGACTACTAAAAGAACTTTATCCTTGAATTGGCCAAAGGGAGCTAAAGCTCGGAAAGTAACTGCAAAATTCATCTCATGCAATCCTTTTTTCACAATTCTCATAAAGCCTTATCATCTGGTAAAAGGTCAGCTGCGTGTACCAAGTTTTAAAGGGGTTATTGTGAACAAAGAGAAGTATGTGAAGCTGCAGATTGGAAAAAGATCATGGAATGTGAAATTGCTCCATTGTCATGGAAATAACTATGGTCGACACCTTTCGGCGGGTTGGCGCTTTTCAAAGACACAAACATCTCCTGGTTGCGATCAACTTTCACTTGCAAACAATGACCAACCGGCTCAAAGGCGACAGCCATTATCTGTAGTCTCGTACTCACACGGAGCAATTTCACATTCCGTGGATCTTTTCCATATCTGCAGCATCACATTCTTATTCTTGTTCTCGATAACACCTTTAAACTTTGGTACATACTGCATAGTATAA 1032 0.3595 MARTNCTKLSIHFFKIILQTNLQRLKIPNKFTKSHEVGLSNPVLIKPPDDTKWKVYWKKVSGEIWFEKGWKDFTQNYSLGHGCLVLFDYKEGTSKFDVLILGQNAVEIDYDPSSYTYDDENDNVGDSDDESVQILDQKDNIIDHSDDESIEILDEWLKRKKNKQRLPIGRSPRPHKKVRGAIEKTTKRTLSLNWPKGAKARKVTAKFISCNPFFTILIKPYHLVKGQLRVPSFKGVIVNKEKYVKLQIGKRSWNVKLLHCHGNNYGRHLSAGWRFSKTQTSPGCDQLSLANNDQPAQRRQPLSVVSYSHGAISHSVDLFHICSITFLFLFSITPLNFGTYCIV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00999 343 ProSiteProfiles B3 DNA-binding domain profile. 10 104 IPR003340 GO:0003677
Tsu03g00999 343 SMART B3_2 13 104 IPR003340 GO:0003677
Tsu03g00999 343 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 5 276 IPR039218 -
Tsu03g00999 343 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 5 276 - -
Tsu03g00999 343 Gene3D - 6 105 IPR015300 -
Tsu03g00999 343 CDD B3_DNA 12 101 IPR003340 GO:0003677
Tsu03g00999 343 Pfam B3 DNA binding domain 20 97 IPR003340 GO:0003677
Tsu03g00999 343 Gene3D - 195 278 IPR015300 -
Tsu03g00999 343 SUPERFAMILY DNA-binding pseudobarrel domain 12 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00999 Tsu-Chr3 9252079 9265409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00999 13 273 B3 DNA Binding Superfamily AT3G18990 25.166 1.21e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu03g00999 B3 2.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00999 - - mtr:MTR_3g061330 324.324