Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00992 ATGGGGCGTATTCCATGTTGTGAGAAGGACAATGTGAAAAGAGGTCAGTGGACACCTGAGGAAGATAACAAGCTCTCAACTTACATTGCTCAACATGGCACTCGCAATTGGCGCCTCATTCCCAAGAATGCTGGCCTTCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGTCCTGATCTTAAGCATGGCAATTTCTCCGATGAAGAAGAGCAAACGATTGTGAAGCTTCATTCAGTTTTCGGTAACAGGTGGTCACTCATAGCAGCCCAGCTGCCAGGACGCACCGACAATGATGTCAAAAACCACTGGAACACCAAGCTGAAAAAGAAACTATCAGGCATGGGTATAGACCCTGTTACCCACAAGCCATTCTCCCATCTAATGGCGGAAATTGCTACAACATTGGCACCCCCACAGGCAGCCCACCTAGCTGAAGCAGCCCTTGGTTGTTTCAAAGATGAGGTGCTCCACCTTCTTACCAGGAAGCCAATTAACTACCAGGGCCAACATTCTAATGCAGCAATGGGGAATAACATCACCGATTACTTTAACTGTAAGCCAGAAGAAAAGGAAGATACTGTTGAGAAGATTAAGTTTGACCTATCAAAGGCCATACAACAAGAACATGAAATGGTACCCACAAATAAACCTTGGGACTCCACTGCAGCTACATCTGCAAGTTTTGCAATGCCATACAATGTTTTCCCTACGATGTCTGGATTTCAGTTCAGTCCATCGTATTTTGGCAATAAAGGGGATGCATCACCATGGAACCAAAGTTTATGTACTGGAAGCACATGCACAGCCATGGATCAGCAAAGCCAGTTTCATGAAAAACTTGAAGAGGAAAATGGAGATGATTCTGAGGCTACAAAAGAAATTAGAAATCTATCCAATATATTCAACTCAGACTGTGTTGTGTGGGATTTACCAGCCGAAGATTTAATTAATCCCATGGTATAA 978 0.4407 MGRIPCCEKDNVKRGQWTPEEDNKLSTYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGNFSDEEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTRKPINYQGQHSNAAMGNNITDYFNCKPEEKEDTVEKIKFDLSKAIQQEHEMVPTNKPWDSTAATSASFAMPYNVFPTMSGFQFSPSYFGNKGDASPWNQSLCTGSTCTAMDQQSQFHEKLEEENGDDSEATKEIRNLSNIFNSDCVVWDLPAEDLINPMV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00992 325 CDD SANT 69 112 IPR001005 -
Tsu03g00992 325 SMART sant 13 63 IPR001005 -
Tsu03g00992 325 SMART sant 66 114 IPR001005 -
Tsu03g00992 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu03g00992 325 CDD SANT 17 61 IPR001005 -
Tsu03g00992 325 Gene3D - 14 66 - -
Tsu03g00992 325 Gene3D - 68 128 - -
Tsu03g00992 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu03g00992 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu03g00992 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu03g00992 325 PANTHER TRANSCRIPTION FACTOR MYB80 1 325 - -
Tsu03g00992 325 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Tsu03g00992 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu03g00992 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu03g00992 325 PANTHER F14D16.11-RELATED 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00992 Tsu-Chr3 9186982 9188156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00992 1 325 MYB Transcription Factor Family AT5G56110 55.589 4.80e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g00992 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00992 K09422 - gmx:100800764 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00992 03 9186982 9188156 Tsu03g00992 03 9186982 9188156 ECH