Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00987 ATGCAGAATACTGCATCATCCGCAGTTACTATTCGCGAAGAATGCCTCACACACGCTCCTCAACTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTACCAGGATCCATATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCCAATGgGATATCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTCGAGATGGCTCAAGAACCTGTTTATGTGAACGCCAAACAATACCAGGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGACATCAGCATGCTATGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGGGAGGGCTCAAACAACTCTGGAAAGGATAATGGCTCTGGTCCAGTCGTATCATCACAGTCAATTAGTTCATCTGGTTCAGAACCTTTGCCTTCGGACTCTGCCGAAACCTGGAACTCTCCCAACATGCGACAAGATGCAAGAGCATCAAATGAAAATGATGGTGGCTCCTACCATAGTAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGACGGTGGGGACTGTTCAGGGCAGCTACGTGGAAGCATATCCTCGAACGAGGCATCGCAGAGGCGACTGGCAATTCAGTAG 714 0.4706 MQNTASSAVTIREECLTHAPQLELVGHSIACATNPYQDPYYGGMMAAYGHQPMGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNNSGKDNGSGPVVSSQSISSSGSEPLPSDSAETWNSPNMRQDARASNENDGGSYHSNNNGMQSSRYQGERVEDGGDCSGQLRGSISSNEASQRRLAIQ 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00987 237 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 75 130 IPR001289 GO:0003700|GO:0006355
Tsu03g00987 237 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 1 227 - -
Tsu03g00987 237 ProSitePatterns NF-YA/HAP2 subunit signature. 78 98 IPR018362 GO:0003677|GO:0016602
Tsu03g00987 237 Gene3D - 73 135 - -
Tsu03g00987 237 MobiDBLite consensus disorder prediction 106 237 - -
Tsu03g00987 237 MobiDBLite consensus disorder prediction 219 237 - -
Tsu03g00987 237 MobiDBLite consensus disorder prediction 108 127 - -
Tsu03g00987 237 SMART cbf3 72 133 IPR001289 GO:0003700|GO:0006355
Tsu03g00987 237 MobiDBLite consensus disorder prediction 135 205 - -
Tsu03g00987 237 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 227 IPR001289 GO:0003700|GO:0006355
Tsu03g00987 237 ProSiteProfiles NF-YA/HAP2 family profile. 73 133 IPR001289 GO:0003700|GO:0006355
Tsu03g00987 237 PRINTS CCAAT-binding transcription factor subunit B signature 76 98 IPR001289 GO:0003700|GO:0006355
Tsu03g00987 237 PRINTS CCAAT-binding transcription factor subunit B signature 107 130 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00987 Tsu-Chr3 9138978 9142647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00987 13 237 CCAAT-HAP2 Transcription Factor Family AT3G20910 56.466 9.05e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tsu03g00987 CBFB_NFYA 7.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00987 K08064 - gmx:100808378 341.273