Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00985 ATGAAGACGAAGATCTCTGGAAAATGCGATGATGCATTGGCGTATTTCAAGGCAGTAGAAGTTACCTTTAAACATGATAGGAAAAAGTATGATGAGTTTTTAAAAATCTTAATAGATTTAAATTTGAGGAGGGGTGGAAAAAGAGGAATTGCTACAAGAGTGAAGAGGCTGTTTAAAGGAAATTCAGATTTAATGTTGGGATTCAACACCATATTATTGCCAAAGGAATATCAAATCACACTTCCAATCACACTTCCTGGTAGGACTGGTTAG 273 0.3553 MKTKISGKCDDALAYFKAVEVTFKHDRKKYDEFLKILIDLNLRRGGKRGIATRVKRLFKGNSDLMLGFNTILLPKEYQITLPITLPGRTG 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00985 90 PANTHER SIN3B-RELATED 8 82 IPR039774 GO:0003714
Tsu03g00985 90 Pfam Paired amphipathic helix repeat 29 71 IPR003822 GO:0006355
Tsu03g00985 90 ProSiteProfiles PAH domain profile. 1 75 IPR003822 GO:0006355
Tsu03g00985 90 SUPERFAMILY PAH2 domain 8 72 IPR036600 GO:0006355
Tsu03g00985 90 Gene3D Paired amphipathic helix 11 74 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00985 Tsu-Chr3 9123291 9123563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00985 11 81 WRKY Transcription Factor Family AT4G12020 52.113 5.05e-15 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu03g00985 PAH 6.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00985 K11644 - ppp:112276683 84.3445