Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00955 ATGACATCCTATTCACGGAGATCAAGGTATTCCGCCTCTCCCTCTCCATCGCCCTCTCCATACAGGCGATATAGTAGGTCTTTGTCCAGGTCTCTATCAAGGTCCATATCCAGAAGCAGTTCGAGGAGCGCATCCCGAGATGCAGAAAATCCGGGAAACAATTTGTATGTGACAGGACTGTCTCCTAGGATTACCAAGAGAGAATTGGAAAAGCATTTTGCTACTGAGGGAAAAGTTGTAGACGTGCATCTGGTTGTTGATCCATGGACAAGGGAGTCACGTGGTTTTGGATTTGTGACGATGGCGTCTTTAGAAGAAGCTGATCGATGTGTGAAGTATCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCATGGTGGAGAAGGCTAGAAGACGACGCGGTCGAACCCCAACACCTGGGAAATATCTAGGTCTCAGGACTATTCGAGGACGGTGTCGCTCTCCAAGCTACTCTCCTCGCCGTTCTCCAAGCTATTCTCCCTATCGAAGAAGTTACAGTCGTTCACCTTATTCTTCAGATCGCAGTCGGAGTCGCTCTTACTCACCTGAATACAGACGAAGAAGGACCTACTCTCCTGACTACAGACGAAGGAGAGCATACTCGCCATACTATAGTCGACGCAGGTCATACTATCGTTATGACCGGCACAGATCATATTCTCGGTCTCGCTCTCCTTACAGCAGGTCTCCCGTCAGCATGCGTGACAGATCATACTCTCCCTATGGCACCAGATATGAGTCACCTGATGATAGCTACTATAGAAGGTACCATTACAGATCGGTTTCTCGAAGTGTCTCATCCAGGCCAAGGAGGTCAAGGAGGAGCTACTCACGAAGTGCCTCTCCTGTTCGAAGTGTCTCCCCCATGCCAAGGAAGAGATCAGGAAGGAGTCATTCAAGAAGCTCTAGAAGGAGCGGTGATTATTACAAATATAAGCATTCGCGATCAAGAAGCTCAAGTGTGAGCGCGAGTTCAAGATCGTTTTCAAGGTCCAACACTCCTGGATCTACCTCTCCTTCAAATTGA 1047 0.4833 MTSYSRRSRYSASPSPSPSPYRRYSRSLSRSLSRSISRSSSRSASRDAENPGNNLYVTGLSPRITKRELEKHFATEGKVVDVHLVVDPWTRESRGFGFVTMASLEEADRCVKYLNRSVLEGRVIMVEKARRRRGRTPTPGKYLGLRTIRGRCRSPSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPEYRRRRTYSPDYRRRRAYSPYYSRRRSYYRYDRHRSYSRSRSPYSRSPVSMRDRSYSPYGTRYESPDDSYYRRYHYRSVSRSVSSRPRRSRRSYSRSASPVRSVSPMPRKRSGRSHSRSSRRSGDYYKYKHSRSRSSSVSASSRSFSRSNTPGSTSPSN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00955 348 SUPERFAMILY RNA-binding domain, RBD 36 142 IPR035979 GO:0003676
Tsu03g00955 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Tsu03g00955 348 Gene3D - 3 137 IPR012677 -
Tsu03g00955 348 SMART rrm1_1 54 127 IPR000504 GO:0003723
Tsu03g00955 348 MobiDBLite consensus disorder prediction 307 321 - -
Tsu03g00955 348 MobiDBLite consensus disorder prediction 157 184 - -
Tsu03g00955 348 MobiDBLite consensus disorder prediction 149 208 - -
Tsu03g00955 348 MobiDBLite consensus disorder prediction 322 348 - -
Tsu03g00955 348 MobiDBLite consensus disorder prediction 222 348 - -
Tsu03g00955 348 PANTHER TRANSFORMER-2-RELATED 12 273 - -
Tsu03g00955 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Tsu03g00955 348 MobiDBLite consensus disorder prediction 1 59 - -
Tsu03g00955 348 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 12 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00955 Tsu-Chr3 8838911 8841478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00955 54 135 Eukaryotic Initiation Factors Gene Family AT2G36660 32.927 4.92e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00955 - - mtr:MTR_3g462330 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00955 03 8838911 8841478 Tsu03g00955 03 8838911 8841478 ECH