Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00952 aTGGCTTTCATTGGAAATAACGACGCAACAAAACTCAACACACGGAAGAGAAAATTTGGTGAAATCAAGAAAGCGGAAAAACCAAACAAGTCTCATGTGATGTTCTCAAAAGGTACAATCGGAATTTTCAATAAAGTAATAGAACTCTCAATTTTGTGTAACGCAAAAACTACACTCATTGTCACATCTCCCAACAATGAGCTCTATACATGTGGCTATCCTAATTGCGACGACGTCATTCAACAATTTTTGACCGAAAAAGACATCATTGAAGACAATGAGAAAAAGAAGCAAGAGGAGATTGTTGAAACTCTAAGGCTTGAATATGAGGCAATTGGAGATGAACTTGAGAGACtattttga 363 0.3609 MAFIGNNDATKLNTRKRKFGEIKKAEKPNKSHVMFSKGTIGIFNKVIELSILCNAKTTLIVTSPNNELYTCGYPNCDDVIQQFLTEKDIIEDNEKKKQEEIVETLRLEYEAIGDELERLF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00952 120 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 13 98 - -
Tsu03g00952 120 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Tsu03g00952 120 PANTHER MADS BOX PROTEIN 13 98 - -
Tsu03g00952 120 SMART madsneu2 14 74 IPR002100 GO:0003677|GO:0046983
Tsu03g00952 120 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 70 IPR002100 GO:0003677|GO:0046983
Tsu03g00952 120 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Tsu03g00952 120 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Tsu03g00952 120 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Tsu03g00952 120 Gene3D - 28 110 IPR036879 GO:0003677|GO:0046983
Tsu03g00952 120 SUPERFAMILY SRF-like 17 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00952 Tsu-Chr3 8821424 8821786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00952 29 97 Type I MADS-box Gene Family AT2G34440 37.681 4.41e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g00952 SRF-TF 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00952 - K09264 cam:101507050 115.546