Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00943 ATGAAGAGAAAACTAATTCCACAAATCAatgatgaaaagaagaagaaaccagCTACAGAAAAAATCATGAAGCACTCACTCTCGGAAGCTAAAACAATGAAGAGAAATTCTCTTACAGAAATCaatgaagaaaggaagaagaagaagaaaccaacCACAGTGATTGATAGTAGTCCACAATCATCAACCCTTGGTACCATCATTGATGAAAGATTCCCAGAGATGATTCGTGGCGAATGTTCAAGAAGTTCATGTGGTATATGCTTTGATTTCATGACAGATTCTGATATGTTCAAAAGAAAACATTGCAACCATCTCTTTTGTGTTGAATGTATTTCAAAGTATGTAGATTCTCAAATTAGCAATAATGTGGTTAAGGTGACTTGTCCAACTCCTGATTGCTCGGCGAAATTGCTGCCGAGGcatttaaaaaacattatgCCTAGAGAATTTATCGATAGATGGGCAATCGCAAAGTACGAGTCTAGAATTTCATTGGAGAAAAAGACTTATTGTCCGTTTAAGGATTGTTCGGTTTTGTTGGTGAATGATAATGACAGGAAAGAAGTTGTGACTAGTTGCGAGTGTCCGTCCTGTCATAGGTTATTTTGTGCGCAATGTAAAGTTCCATGGCACGCGGAGATGATGTGTTgtgaatttaaaaatttgaatcgCGATAAAGATGAAAAAGATTTAGATGATAAGTTTTTGAATTTGGCTAAAAGAAAGAAGTGGCGGAGATGTCCAAATTGCTCTATCTATGTCACGAGAACAAGTGGATGTGAACATATCAAATGCAGGTGTAAATGTAGCTTCTGCTACCATTGTGGGAAGAAATGGAAGTTTGGACATACATGCAAGAAGAGACGACATTCTCTACTCCACGATTTTAGAGGTAACTCTTCGGCTTTCGCAGgttga 921 0.3431 MKRKLIPQINDEKKKKPATEKIMKHSLSEAKTMKRNSLTEINEERKKKKKPTTVIDSSPQSSTLGTIIDERFPEMIRGECSRSSCGICFDFMTDSDMFKRKHCNHLFCVECISKYVDSQISNNVVKVTCPTPDCSAKLLPRHLKNIMPREFIDRWAIAKYESRISLEKKTYCPFKDCSVLLVNDNDRKEVVTSCECPSCHRLFCAQCKVPWHAEMMCCEFKNLNRDKDEKDLDDKFLNLAKRKKWRRCPNCSIYVTRTSGCEHIKCRCKCSFCYHCGKKWKFGHTCKKRRHSLLHDFRGNSSAFAG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00943 306 SUPERFAMILY RING/U-box 83 162 - -
Tsu03g00943 306 SMART ibrneu5 230 286 IPR002867 -
Tsu03g00943 306 SMART ibrneu5 153 217 IPR002867 -
Tsu03g00943 306 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 287 - -
Tsu03g00943 306 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 287 IPR031127 GO:0004842|GO:0016567
Tsu03g00943 306 Pfam IBR domain, a half RING-finger domain 159 217 IPR002867 -
Tsu03g00943 306 Pfam IBR domain, a half RING-finger domain 239 286 IPR002867 -
Tsu03g00943 306 ProSitePatterns Zinc finger RING-type signature. 103 112 IPR017907 -
Tsu03g00943 306 Gene3D - 215 298 - -
Tsu03g00943 306 ProSiteProfiles TRIAD supradomain profile. 81 299 IPR044066 -
Tsu03g00943 306 MobiDBLite consensus disorder prediction 34 62 - -
Tsu03g00943 306 MobiDBLite consensus disorder prediction 1 21 - -
Tsu03g00943 306 Pfam Ring finger domain 84 131 IPR001841 -
Tsu03g00943 306 ProSiteProfiles Zinc finger RING-type profile. 85 130 IPR001841 -
Tsu03g00943 306 MobiDBLite consensus disorder prediction 34 53 - -
Tsu03g00943 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 168 IPR013083 -
Tsu03g00943 306 SUPERFAMILY RING/U-box 234 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00943 Tsu-Chr3 8731424 8732748 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00943 78 277 C3H Transcription Factor Family AT2G19610 31.132 5.09e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00943 K11975 - mtr:MTR_0777s0010 404.831