Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00940 ATGAAAAAATCTTCAACCACCAGTACTTCTCAAGGTCAATCTCCAAAAAGCTTTTGCAGTATATGTTTTGATTTAGTAATACACTCTAAAATTTTCACAAACGGTTCATGTAATCACCCCTTCTGTACTGAATGCATATCCAAGTATGTGAAAGTTAAACGAAAAGAAAACGTGGCCAAAGTGAACTGTCCACATCCAAAATGTTCTGTTGAACTCAAACCAGAACATTTGCAATCTATTTTAcctaaaaaaatcattgttgATTGGGAATCTGCAATATATGAGTCTTCTTTTGCTTTGCAGCAAAAAATCTACTGCCCTTATAAGAATTGTTCTCTTTTATTGGTGAATGACGGGAAAGAGAATGTTACAAGCTGTGAATGTCCTTCTTGTCATAGGCTATTCTGTGCACAATGTAAAGTTCCATGGCATGGAGATATGAATTGCAGTAAATTTCAGAAGTTAAAAAATCTTTCATATGAAGAACAACTGGATATGGAATTTTTGGAGTTGGCTAAAAGAAAAGAATGGCAGAAATGTCCAAGATGCTCTATTCATGTAGAAAAATCTGAGGGATGTTTATACATGAGATGCAGGTTGTAA 603 0.335 MKKSSTTSTSQGQSPKSFCSICFDLVIHSKIFTNGSCNHPFCTECISKYVKVKRKENVAKVNCPHPKCSVELKPEHLQSILPKKIIVDWESAIYESSFALQQKIYCPYKNCSLLLVNDGKENVTSCECPSCHRLFCAQCKVPWHGDMNCSKFQKLKNLSYEEQLDMEFLELAKRKEWQKCPRCSIHVEKSEGCLYMRCRL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00940 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 99 IPR013083 -
Tsu03g00940 200 Pfam IBR domain, a half RING-finger domain 101 149 IPR002867 -
Tsu03g00940 200 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Tsu03g00940 200 ProSiteProfiles Zinc finger RING-type profile. 19 67 IPR001841 -
Tsu03g00940 200 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 198 - -
Tsu03g00940 200 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 198 IPR031127 GO:0004842|GO:0016567
Tsu03g00940 200 SUPERFAMILY RING/U-box 16 96 - -
Tsu03g00940 200 SUPERFAMILY RING/U-box 101 154 - -
Tsu03g00940 200 SUPERFAMILY RING/U-box 166 198 - -
Tsu03g00940 200 SMART ibrneu5 87 149 IPR002867 -
Tsu03g00940 200 Gene3D - 146 199 - -
Tsu03g00940 200 ProSiteProfiles TRIAD supradomain profile. 15 200 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00940 Tsu-Chr3 8721788 8722390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00940 4 199 C3H Transcription Factor Family AT2G19610 26.699 8.38e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00940 K11975 - mtr:MTR_3g462570 286.189