Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00939 ATGATTATGACTCGATCTCGTACTGCTCTTTTAGCAACACAAAACACAATGAAGAAGAGAATATCtcacaagaagaagaaacaagCAACAACTACTAAGATCAAAACCAACAAACCAAACAAAGGTCAATCCTCAAAAAGATTCACATGCGGTATATGTTTTATTTCTGTAAAAGTTTCTAAAATATTCACAAACACTTCATGCAATCATCCTTTTTGTACTACATGCATATCTAAGTATGTCAATGTTCAAAGAAAAGACAAAGTGCTGAAACTGAATTGTCCCAATCCAACATGTTCTGTTGAACTCAAACCAGAACATTTACGATCTATTTTATCTAAAAAAGTTATCATTGATTGGGAATCTGCTATCTACGAGTCTTCGGTTTCTTTGGAGCAAAAGATTTACTGTCCTTATAAGAATTGTTCACTTTTGTTGGTGAATGACGGAGCCGAGGTTGTTACGAGCTGTGAATGTCCTTCTTGTCATAGGTTATTCTGTGCACAATGTAAAGTTCCGTGGCATGCTGATATGAGTTGTCGGGAATTTCTTGACTCGAAAAATGGTCTAGATGAGAAACAAttggaaaagaaatttttaGATTTGGCTAAAGAGCAGAAGTGGCAGAAATGTCCCAAATGTTCTATGCATGTTCAGAGGTCTGGTGGATGTGACATGCTTATAATAGATGAATCTCGAGTGGCGAATATGCATGAAGTTCTAGCTGTTAATGATCACAATGACATAATGTTTGGTACTTGA 762 0.3451 MIMTRSRTALLATQNTMKKRISHKKKKQATTTKIKTNKPNKGQSSKRFTCGICFISVKVSKIFTNTSCNHPFCTTCISKYVNVQRKDKVLKLNCPNPTCSVELKPEHLRSILSKKVIIDWESAIYESSVSLEQKIYCPYKNCSLLLVNDGAEVVTSCECPSCHRLFCAQCKVPWHADMSCREFLDSKNGLDEKQLEKKFLDLAKEQKWQKCPKCSMHVQRSGGCDMLIIDESRVANMHEVLAVNDHNDIMFGT 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00939 253 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 18 227 - -
Tsu03g00939 253 SUPERFAMILY RING/U-box 44 127 - -
Tsu03g00939 253 SMART ibrneu5 118 180 IPR002867 -
Tsu03g00939 253 ProSitePatterns Zinc finger RING-type signature. 68 77 IPR017907 -
Tsu03g00939 253 Pfam IBR domain, a half RING-finger domain 125 180 IPR002867 -
Tsu03g00939 253 MobiDBLite consensus disorder prediction 22 44 - -
Tsu03g00939 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 131 IPR013083 -
Tsu03g00939 253 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 227 IPR031127 GO:0004842|GO:0016567
Tsu03g00939 253 ProSiteProfiles TRIAD supradomain profile. 46 253 IPR044066 -
Tsu03g00939 253 ProSiteProfiles Zinc finger RING-type profile. 50 95 IPR001841 -
Tsu03g00939 253 SUPERFAMILY RING/U-box 131 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00939 Tsu-Chr3 8712376 8713765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00939 49 227 C3H Transcription Factor Family AT2G19610 29.016 6.80e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00939 K11975 - mtr:MTR_3g462570 270.781