Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00929 ATGAAGTGGGAAATGGAAATTCTTTCACCTAATTCTCATCCTCATGCACCATTTATTCAAAATTCCAACAATACCAACAATTGGTTTTTGGAAGATAATAGTAGCATGAGTAACAGGAACACAAAATGGACTCCTGCAGAGAACAAATTGTTTGAAAATGCTCTTGCAGTTTACGATAAGGATACGCCGGATCGGTGGCATAAAGTAGCTGAAATGATACCTGGAAAGAGTGTTATTGATGTGATGAATCAGTATAAGGAATTAGAAGCTGATGTTTGTAACATAGAAGCTGGTTTAATTCCAATTCCTGGTTATAGTACTAGtactagtactactactacttCACCTTTTACCTTAGATTGGGTGAATAATTCTTCTGGATATGATGGTTTTAGAGGAATCAATTCAAAGAGAGGCTCTTCTGGTAGATCTCCtgatcaagaaagaaaaaaaggtgtACCATGGACTGAAGAAGAACACAAGTTATTTCTATTGGGATTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATTTCAAGGAATTTTGTGATAACAAGAACACCAACACAAGTAGCTAGCCATGCTCAAAAGTATTTCATAAGACAACTTTCTGGTGGCAAAGACAAAAGAAGAGCTAGCATTCATGACATAACAACAGTTAATCTCACAGAAACTTCTAGAACTTCACCAAATTCAGAAGACACAAAAAGATCATCAACTTCACCAAACCATAACAATTCAATGAATATCAACAAGTATTCAACTGTCAACACTACATCATCTGAGATGCATTTTCAGCCAGCTATGAATGCATTCAATTCTGCTGCACATGAACAAATTTTCATGTCTCCTTATGGAGTTAATAACTCTTATGGATTTAAAATGCATCAAGGTCAAGATATGCATAGAAATCATCCTCTTCATGAGTCTTCTTACTTTGGACCTCAAACACAAAACATGGTTTTCCAAATGCAATCTTCTCAACAACACTATTCACATGCATGA 1005 0.3413 MKWEMEILSPNSHPHAPFIQNSNNTNNWFLEDNSSMSNRNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKSVIDVMNQYKELEADVCNIEAGLIPIPGYSTSTSTTTTSPFTLDWVNNSSGYDGFRGINSKRGSSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSRTSPNSEDTKRSSTSPNHNNSMNINKYSTVNTTSSEMHFQPAMNAFNSAAHEQIFMSPYGVNNSYGFKMHQGQDMHRNHPLHESSYFGPQTQNMVFQMQSSQQHYSHA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00929 334 SMART sant 39 91 IPR001005 -
Tsu03g00929 334 SMART sant 151 201 IPR001005 -
Tsu03g00929 334 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 302 IPR043363 -
Tsu03g00929 334 Gene3D - 34 102 - -
Tsu03g00929 334 Pfam Myb-like DNA-binding domain 42 87 IPR001005 -
Tsu03g00929 334 Pfam Myb-like DNA-binding domain 154 199 IPR001005 -
Tsu03g00929 334 Gene3D - 153 203 - -
Tsu03g00929 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 203 IPR017930 -
Tsu03g00929 334 CDD SANT 154 199 IPR001005 -
Tsu03g00929 334 ProSiteProfiles SANT domain profile. 155 203 IPR017884 -
Tsu03g00929 334 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 150 202 IPR006447 GO:0003677
Tsu03g00929 334 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Tsu03g00929 334 ProSiteProfiles Myb-like domain profile. 35 89 IPR001005 -
Tsu03g00929 334 ProSiteProfiles Myb-like domain profile. 147 199 IPR001005 -
Tsu03g00929 334 SUPERFAMILY Homeodomain-like 149 202 IPR009057 -
Tsu03g00929 334 MobiDBLite consensus disorder prediction 216 252 - -
Tsu03g00929 334 MobiDBLite consensus disorder prediction 210 252 - -
Tsu03g00929 334 CDD SANT 42 88 IPR001005 -
Tsu03g00929 334 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 302 - -
Tsu03g00929 334 MobiDBLite consensus disorder prediction 132 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00929 Tsu-Chr3 8600108 8602068 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g00929 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00929 - - cam:101514273 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00929 03 8600108 8602068 Tsu03g00929 03 8600108 8602068 ECH
Tsu03g00929 03 8600108 8602068 Tsu05g03285 05 44192234 44194056 ECH
Tsu05g02726 05 37304420 37306836 Tsu03g00929 03 8600108 8602068 ECH
Tsu04g01327 04 13455396 13458229 Tsu03g00929 03 8600108 8602068 ECH