Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00927 ATGAAATTAATGGCTCCTTTACTTGGACATGCATTCTCTCATATAGTACTCATCCTTATTGGTTTACTCTCAACATTATTCATAGTGATCCCTTCCTCTTGTTTTAATCCCAAGAAGTTAGTTAATGTGACTTCATACTCCTCATCTTATTCAGATTGGTCTTCTTCAGTGGCCACTTGGTATGGACATGCCAACGGTGATGGAAGTGAAGTTGGTGCTTGTGGATACGGAAATGCAGTTGGGGAACCTCCATTCTCCTCAATGATATCAGCTGGAAGTCCTCTCATCTATAACTCAGGCAAAGGCTGTGGTTCATGCTATGAGGTGAAGTGCACCAAAAATTCTGCATGCTCAGGCAATCCAGTGAGTGTGGTTATCACTGATGAGTGTGCTGAATGTGGCTCACATGCTCAATATCATTTTGATTTGAGTGGCAGTGCTTTTAGTTCCATGGCAATTTCAGGTAGAAATGAAGAGTTACTCTATGCTGGGAAAGTAGCTATTCAACATAGAAGAGTTGCATGCAACTACCCTTATATGTCAGTAGCTTTCCACGTGGATGTTGGATCCAACCAAGAATATTTTGCTATCTTGATTGAATATGTGAATGGAGATGGTGATCTTAACAAAGTTGAACTCATGGAAGCAATTGACTCAGCCTCTTGGGATACCATGGAACAATCATGGGGTGCTCTTTGGAAATTTAGTAAAGGGGCACCATTGAAAGCACCATTTTCTATTAAACTAACCACACTTGAGTTTGGCAAGACTTTTGTGGCCCAGAATGTGATCCCTGTAGGTTGGGAGCCTGGTCAGACATATTCATCAGTTGGaaatttttaa 843 0.4104 MKLMAPLLGHAFSHIVLILIGLLSTLFIVIPSSCFNPKKLVNVTSYSSSYSDWSSSVATWYGHANGDGSEVGACGYGNAVGEPPFSSMISAGSPLIYNSGKGCGSCYEVKCTKNSACSGNPVSVVITDECAECGSHAQYHFDLSGSAFSSMAISGRNEELLYAGKVAIQHRRVACNYPYMSVAFHVDVGSNQEYFAILIEYVNGDGDLNKVELMEAIDSASWDTMEQSWGALWKFSKGAPLKAPFSIKLTTLEFGKTFVAQNVIPVGWEPGQTYSSVGNF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00927 280 PRINTS Major pollen allergen Lol pI signature 111 121 IPR005795 GO:0005576|GO:0019953
Tsu03g00927 280 PRINTS Major pollen allergen Lol pI signature 152 167 IPR005795 GO:0005576|GO:0019953
Tsu03g00927 280 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Tsu03g00927 280 PRINTS Major pollen allergen Lol pI signature 231 248 IPR005795 GO:0005576|GO:0019953
Tsu03g00927 280 PRINTS Major pollen allergen Lol pI signature 91 102 IPR005795 GO:0005576|GO:0019953
Tsu03g00927 280 PRINTS Major pollen allergen Lol pI signature 200 215 IPR005795 GO:0005576|GO:0019953
Tsu03g00927 280 PANTHER EXPANSIN-B3 15 280 - -
Tsu03g00927 280 PANTHER EXPANSIN-B2-RELATED 15 280 - -
Tsu03g00927 280 Pfam Lytic transglycolase 90 157 IPR009009 -
Tsu03g00927 280 Pfam Expansin C-terminal domain 182 265 IPR007117 -
Tsu03g00927 280 SUPERFAMILY Barwin-like endoglucanases 41 178 IPR036908 -
Tsu03g00927 280 SUPERFAMILY PHL pollen allergen 181 276 IPR036749 -
Tsu03g00927 280 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Tsu03g00927 280 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Tsu03g00927 280 PRINTS Expansin/Lol pI family signature 163 179 IPR007118 GO:0005576
Tsu03g00927 280 PRINTS Expansin/Lol pI family signature 262 276 IPR007118 GO:0005576
Tsu03g00927 280 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Tsu03g00927 280 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Tsu03g00927 280 Gene3D - 37 175 IPR036908 -
Tsu03g00927 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 276 IPR007117 -
Tsu03g00927 280 SMART dpbb_1 89 170 IPR007112 -
Tsu03g00927 280 Gene3D - 176 277 IPR036749 -
Tsu03g00927 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 180 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00927 Tsu-Chr3 8580643 8584025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00927 34 280 Expansin Gene Family AT1G65680 55.466 4.05e-101 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00927 - - gmx:548090 420.624