Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00923 ATGTTGTTGTTTTCTGATTCAATGTTAAAATTCAATCTCTTTCATGTTTCAACTCATACAACAACACTTCACTCTACTGTAAATGTTCATTGCTGCAatgatttttctaatttatctGTTTCTGTTtccaaaacaaaacatcatcaaGATGACTCATTTACGTTATCAAGCATCATTAACTCGTCTAGGTTGTCCCCTGAAACATCTCTTAAACTTTCCCAAAGGTTGAATAATAGAAACTCTGATGATGGCCCAAATGCTGTAATTCACCTTCTCAGAAACTATGGCTTCTCTGCTTCCCAATTATCAAGTCTTGTTAAGAAATACCCTTTTGTGCTTTTATCAAAACCCGAAAAGACCCTTTTGCCTAAACTCAACTTTTTGCTATCCATTGGGGTTTCAATCACTGATCTCCCCAAAATCCTAATTTGGAACACTGCTTTGTTAACAAGAAGTTTGAACAAAAACATTATACCTCTTTATCAGACTATTAGGAGCTTTGTTCGCAATGATAAAGAGGTTGTTTCAGTTTTGAAGCAGTGGACAGGGTACTATTACACTGATTTCATGGTTCAAAACATTGAGCTTTTGAGGAATCTTGGTGTGCCTCAACGTTTCATTTCCCTTTTGGTATCTAATTTTCCCAATGAAGCATTCATCGAGCATTCTAGATTTGTTGAGGCTGTTAATTTAGTAAAGGAAATGGGGTTCGATCCTTTGAAGgcgaattttgtttttgcacTTCTAGTAATTGCAAGGATGGACAAAGAAACATGggaattgaaattgaagatttttGAGAGGTGGGGATGGTCAAAAGATATATGTCTTTTGGCGTTCCAAAAGTATCCTCGATATATGGTGACCTCGGAAAAAAAGATTATGAAAATAATGAGTTTCTTGGTGAACGATATGGGTTTTACACCAGAAGACATTGCTAGATGGCCTGCGATTCTGAACCGTAGTTTGGAGAAAACAATTGTGCCTAGATTTACAGTTATTAAGATTTTGAAGTCAAGGGGTTTGATAAAGAGTAGTTTGAGCCTAAATAGCATTATTATCTTAAATGAGAAAGCATTTTTGGAGAGATATGTTACCCGATTTGAGAAAGATTTGCCACTCTTATTGGATGCATATAAAGGAGTGGAAAATAGTTCATGA 1161 0.3368 MLLFSDSMLKFNLFHVSTHTTTLHSTVNVHCCNDFSNLSVSVSKTKHHQDDSFTLSSIINSSRLSPETSLKLSQRLNNRNSDDGPNAVIHLLRNYGFSASQLSSLVKKYPFVLLSKPEKTLLPKLNFLLSIGVSITDLPKILIWNTALLTRSLNKNIIPLYQTIRSFVRNDKEVVSVLKQWTGYYYTDFMVQNIELLRNLGVPQRFISLLVSNFPNEAFIEHSRFVEAVNLVKEMGFDPLKANFVFALLVIARMDKETWELKLKIFERWGWSKDICLLAFQKYPRYMVTSEKKIMKIMSFLVNDMGFTPEDIARWPAILNRSLEKTIVPRFTVIKILKSRGLIKSSLSLNSIIILNEKAFLERYVTRFEKDLPLLLDAYKGVENSS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00923 386 SMART mt_12 309 343 IPR003690 GO:0003690|GO:0006355
Tsu03g00923 386 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Tsu03g00923 386 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Tsu03g00923 386 SMART mt_12 277 308 IPR003690 GO:0003690|GO:0006355
Tsu03g00923 386 PANTHER CGI-12 PROTEIN-RELATED 31 381 IPR003690 GO:0003690|GO:0006355
Tsu03g00923 386 Gene3D Transcription termination factor 3, mitochondrial 59 186 IPR038538 -
Tsu03g00923 386 Gene3D Transcription termination factor 3, mitochondrial 187 372 IPR038538 -
Tsu03g00923 386 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 31 381 - -
Tsu03g00923 386 Pfam mTERF 253 361 IPR003690 GO:0003690|GO:0006355
Tsu03g00923 386 Pfam mTERF 89 296 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00923 Tsu-Chr3 8556050 8558153 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu03g00923 mTERF 4.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00923 K15032 - gmx:106799612 404.445