Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00912 ATGGCTTCTATTGGTACTTTCTTTAACAAGTTTTGCTATCTTTTCATCCTCATTGTTCATCTTGGTTGCTTCATGTTCACTACCTCCACCGTCGACGCTACCGGAAAAAAAGATAACCGCCATTTATTACTATCAAAGAAACGAAAAATCTCACCTTTATCTCAACCATCTTCACCTTCACACCCAAAATTCAAAACCCATAAAGCCATTTCTTCTTCTtggcatttcatcaaacaccttTTCTCCACTAACTCCTGCAAAACCGCTATCACCACCACTCAATCGTCACCTCAATCCACCTCCACCTCAACCATCACTTCAACCACCGCCAAATCCTCCCAACAATCTCTTATCTCATTGGTTCAACCCGACCCGAACTTTTCTGATCCACCGCGCAAGAAACAACCTGAATCAGATATCTCCGCCGACAACAACCTCTTCTTCCCCCTCCGCAACGACATCTTCCCATGCACCGCGTGTGGTGAGATTTTCCAGAAACCAAACCTCCTCGAAAATCACCAATCCACAAGCCACGCCGTATCGGAGCTCACCGGATCCGACCCGGGTCATAACATAGTGCAAATCATATTCAAATCGGGTTGGCCCGAAACAAACAACTTCCCAAATATTCACCGAATCCTAAAGATCCATAACAGCCAGAAAATCCTCTCAAAATTCGAAGAATATCGCGAAACTGTGAAATCAAAGGCGTCGCGTAACACGCGCCGCCGTGACGAACGCTGCATCGCCGACGGAAACGAACTAATGCGTTTTCACTGTTCAACTTTTCTATGCGAGTTGGGACATAACGGGGATTCTTCAATTTGTTCTCaacaattttgtaatatttgcGGAATTATTAAATCAGGTTTTTCGCCAAAATTAGATGGAATTTCCACGCTGTCAACTAGCTGGAGGGCAAATTCGTCAATTCCTGATGACATGGAACGTGAATTTGGGTTCATGAACGTGAAACGGGCCATGCTTGTTTGTCGGGTTATCGCGGGTCGGGTCGGGTCTGAATTGGATGATGAGGTGGATAAAACTGATGGGGGTTTTGATTCTGTGATGGCGCGTGCAGAGAGTGGTGTGTACACACGACTTGATGATGAGGAGTTGGTTGTTTTTAATCCTAGGGCTGTGCTTCCTTGTTTTGTTATTGTGTATAGTGTGTGA 1176 0.4388 MASIGTFFNKFCYLFILIVHLGCFMFTTSTVDATGKKDNRHLLLSKKRKISPLSQPSSPSHPKFKTHKAISSSWHFIKHLFSTNSCKTAITTTQSSPQSTSTSTITSTTAKSSQQSLISLVQPDPNFSDPPRKKQPESDISADNNLFFPLRNDIFPCTACGEIFQKPNLLENHQSTSHAVSELTGSDPGHNIVQIIFKSGWPETNNFPNIHRILKIHNSQKILSKFEEYRETVKSKASRNTRRRDERCIADGNELMRFHCSTFLCELGHNGDSSICSQQFCNICGIIKSGFSPKLDGISTLSTSWRANSSIPDDMEREFGFMNVKRAMLVCRVIAGRVGSELDDEVDKTDGGFDSVMARAESGVYTRLDDEELVVFNPRAVLPCFVIVYSV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00912 391 Coils Coil 390 391 - -
Tsu03g00912 391 MobiDBLite consensus disorder prediction 121 141 - -
Tsu03g00912 391 MobiDBLite consensus disorder prediction 50 65 - -
Tsu03g00912 391 Gene3D - 180 390 - -
Tsu03g00912 391 PANTHER NUCLEIC ACID BINDING PROTEIN 3 390 - -
Tsu03g00912 391 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 390 - -
Tsu03g00912 391 MobiDBLite consensus disorder prediction 45 65 - -
Tsu03g00912 391 ProSitePatterns Zinc finger C2H2 type domain signature. 157 178 IPR013087 -
Tsu03g00912 391 SUPERFAMILY ADP-ribosylation 181 390 - -
Tsu03g00912 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 183 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00912 Tsu-Chr3 8474662 8476541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00912 74 391 C2H2 Transcription Factor Family AT2G29660 55.120 1.69e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu03g00912 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00912 - - gmx:100785244 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00912 03 8474662 8476541 Tsu03g00912 03 8474662 8476541 ECH