Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00911 ATGGCTGGTATTGGTAAAACAGCCCTTGCTAAACTCCTTTACAATGATCCCCAAGTAAATGACCAATTTGAGTTAAAAGTCTGGGCAGATATCTCAAAAGATTGTcatgattttgatgattttgatgatttgagtgtctttgaaaacatttttgaaTCTATCACTTCACAAACAATCATTAATGACACAAGTGTTGTGAATAATACCATTTGTCCAAAGTTTTTGCTAGTATTGGATGATGCGTGGGATGCAAAATCTGTCAATTGGATAGTATTGATGAATATCCTTAATGTTGCGGAAACAGGAAGTAGGATCATCATCACAACTCGGGATGAAAGAGTTCCAATATCCATGCAAACCTTTCTTTTTGTGCACTATTTAAGACCTTTGGAAATTGAAGATTGCTGGTCTTTAGTTGCCAGACATGCAATTGGAGCATGGAACAACCATAAACAGTCCGATTTAGATGAAATTGGCAGAGAAATTGCAAAAAAGTGTGATGGATTACCATTAGCTGCAGTAACAGTTGGGGCTCTTCTTCACTACCAATTCTACCCAGACGGGTGGGCTTATGTACTTGAAAGTGACATTTGGAAATCGGGAGATTATACGTTAAGAGCTTCTCTATATTCAAGCTACCATTATCTTTCAAACCATTTAAAACGGTGCTTTGcatattgttcaatttttccgAAGAAGTGCATCTTAGTAAAAAAGGTTGTAGTTCAATTGTGGGCTGCAGAAGGCttgataaaaatttcaactagTCCAGGTGGATGGGAAAAAGTTGGAGGGGAATACTTTGATGAGCTGGTGTCAAGGTCGTTGATACATCGACGATCTATTGGTGACGAGGAAGCAGACTTTGAAATGCACAACCTCGTCCATGATTTAGCTACAGATGTTTCAAGTTCATTTAACTTATCATACAATAGAGGGCCATATgattcattgaataaatttGACAAATTGTATAGATTAAAATATCGGCATACCTTTCTAGCATTGCCATTACAAAAACAGTCATCTCTTTGTTTGCTATCGAACAAGGTAGTACATGACTTGCTGCCCACAATGAAAGGATTACGTGCGTTGTCTTTGTCAAGCTACAAGAGTATTACTGAGATTCCCAACTCTATTGGAAATTTGTTATACCTACAGTACTTAAATCTTTCTCACACTGAGATTGAAAGGTTGCCTTCTGAAACATGCAAGCTTTACAATCTGAAGTTCTTGTTGTTGGCAGGATGTAGACGACTCATTGAATTGCCGGAGGACATAGGGGAATTGGTTAATCTCATTCACCTTGATGTTAGTGATACTGCATTGAGCGAGATGCCCGTACAAATAGCCAAACTAGAAAATCTCCAAACTTTATCTAACTTTGTTGTCAGCAAACATAATGATGGATGGAAGCTTGCAGAGCTGGGAAAATTTCCCCACCTACATGGAAAACTTTCCATCTCACAGCTACAAAATGTTGATGACCCCTTTGAAGCAGATCAGGCCAATATGAAGATGAAAGAGCGAATAGACGAGTTAGCTTTAGAATGGGATTATGGTAGCTTTGTTCCAGATTCTCAAACTAAAAGTGTTGTACTTGAACGTTTGCAACCCTCAACAAATTTGAAAAGTCTCACTATCAAAGGCTATGGTGGATTTAGCTTTCCAAATTGGTTGGGTgattcattatttaaaaatatggtgTATTTAAGGATCTCGAATTGTGATAATTGTTCATGGCTTCCACAACTTGGACAATTGGGTAATCTGAAAGAACTCATTATTGAAAAGATGCAATCAGTAGAGGCAATTGGTATTGAGTTCTATGGAAGTGAATCAGGTGATGATTCTTCTTTTCAACCATTTCCCTCCTTGGAGACTCTACACTTTGAGGATATGCAAGAGTGGGAGGAATGGAACTTGATTGGAGGTACGGCTACCAATTTTCCTAGTCTAAAATCGTTGTCACTAAGTATGTGCCCTAAACTGAGAGTAGAGATCATAGATGACAACTTTCCTTGCTTAGCTGAACTTGAATTAAGAGAATGTCCTCTCCTGGTGCAACCAATGCAATCATCAGATCGTGTATTCAGGCTACTCATGTTTCCTCTAAATTCTCTTCGACAGTTGACACTAGAGGGCTTTACATCTCCGATGTCTTTCCCAACAGACGGTCTACCAAAAACCTTGAAATTTCTCATAATCAGTAACTGTGAGAATCTAGACTTCCCTCATGAATACTTGGAGAATTACACATCACTTGAGGAATTGAAAATATCTTATAGCTGTAATTCGATGATATCATTTACCTTGGGCTCTCTCCCTGTCCTCGAGAGTCTGTTTATTGAGGGATGTAAAAATCTGAAATCGATATTAATTTCAGAAGACGTGTCAGGAAAGAGTCTCTCATTTCTTAAAAGCATAAAAATATGGGATTGTAATGAACTGGAGTCATTTCCCGCAGGTGGATTGGCAACTCCAAACCTTGTTTATATTGCATTGTGGAAGTGCAAGAAGCTTCATTCACTGCCAGAAACAATGAACACTCTAACTGGCCTTCAATATATGGAAATTGACAATCTATCAAATCTTCAATCTTTTGTCATAGATGATTTGCCTAGCAGTTTACTGAAACTGACTGTTGGCTCTGTTGGAGGAATTATGTGGAATACTGAGCCAACTTGGGAACATCTCACTTCGCTTTCAGTGTTGCGAATTAATGGTAATGATACAGTGAACACGCTGATGGCTGCATTACTACCTGTATCTCTTGTGACATTATGCATTTGTGGTCTTGATGGTACAAGCTTTGATGGGAAGTGGCTTCAACATCTCACCTCTCTTCAAAACCTTGAGATTGTTAAAGCTCCCAAACTCAGGTCGTTGCCTAAAAATGGACTGCCTTCATCTCTTTCAGTACTACATGAAAAGGATAAACAGCAACTGACTTCAAATATGTTAGGTTTGAGCAAACACATTCAAGACACAACAAACAACTGCCTTGATTCTAGAGATGCTGCTCTGGTGGAATATAAGGCGCAGGTACTCTTgtTTGCATTTGCTCAACTGGAGGTTGATTCGTCGAATGGTTCCTGCCACAGATCTTCGGGGAATATCCAGGGATGCATTACCGTCACGCGTTCTGTTCACTCCAACAAACTTATTTCACACTCCATTTCTTGTAACCGTCACCGTCACTATCATCAAACCATCACCACCGCAAATCAGATCTTCCACCGGAGGAGACTTCCGATCACCACCGTGAGCTCATTCCTTTCACGAGTCAGTCATCCATTACCGGAGAAAAGCAGAAGACTAAAGCTAACACTGCATCTGCTCTTCTTTACAACTCAACTAGAAGAAAAAGATGCTGAAATATTTGAACTAAGAACCAAGGTCTTCAACAGAAGAAAATGCAAGCACATCTTTTGCATTGACTGCATATGCAAGTATGTAGCTGTTCAAATAAATGATAATGCTTATAAGGTGACGTGTCCAAGTCCAAGTTGTCGTGTGAAATTTAAGCCGAAACATTTGCAACGCATTTTGCCTAAACAACTTGTTGCTAAATGGAAGTATTTAATTTCTGAGGTTTCTACTCCCTCCAAGCCAAAGATTTACTGCCCTTTTCCGAATTGTTCTGTTTTGTTGGGGAAAAATGGTGACTTGAAAGGAGAATCTAAGTGTCCATCGTGTCACAGAGACTTTTGTGCACAGTGCAAAGTTCCATGGCATGCAGGAATGAGTTGTCAGACATTCCAACAATTGAAAAAGAATGACAAAAATGATTCTGATAACAAGTTTATGGAGTTGGTCGACAGAAACAAGTGGCAAAGATGTCCAAATTGCTCTATGTATGTCAAGAGAAGTGAGGGGTGCAGTATCATCAAATGCAGgtgTGGATGCAAATTCTGCTACAAATGTGGGAAGAAGCGATCATATGCACCACATACATGCAATAGTAGTTAG 3972 0.3824 MAGIGKTALAKLLYNDPQVNDQFELKVWADISKDCHDFDDFDDLSVFENIFESITSQTIINDTSVVNNTICPKFLLVLDDAWDAKSVNWIVLMNILNVAETGSRIIITTRDERVPISMQTFLFVHYLRPLEIEDCWSLVARHAIGAWNNHKQSDLDEIGREIAKKCDGLPLAAVTVGALLHYQFYPDGWAYVLESDIWKSGDYTLRASLYSSYHYLSNHLKRCFAYCSIFPKKCILVKKVVVQLWAAEGLIKISTSPGGWEKVGGEYFDELVSRSLIHRRSIGDEEADFEMHNLVHDLATDVSSSFNLSYNRGPYDSLNKFDKLYRLKYRHTFLALPLQKQSSLCLLSNKVVHDLLPTMKGLRALSLSSYKSITEIPNSIGNLLYLQYLNLSHTEIERLPSETCKLYNLKFLLLAGCRRLIELPEDIGELVNLIHLDVSDTALSEMPVQIAKLENLQTLSNFVVSKHNDGWKLAELGKFPHLHGKLSISQLQNVDDPFEADQANMKMKERIDELALEWDYGSFVPDSQTKSVVLERLQPSTNLKSLTIKGYGGFSFPNWLGDSLFKNMVYLRISNCDNCSWLPQLGQLGNLKELIIEKMQSVEAIGIEFYGSESGDDSSFQPFPSLETLHFEDMQEWEEWNLIGGTATNFPSLKSLSLSMCPKLRVEIIDDNFPCLAELELRECPLLVQPMQSSDRVFRLLMFPLNSLRQLTLEGFTSPMSFPTDGLPKTLKFLIISNCENLDFPHEYLENYTSLEELKISYSCNSMISFTLGSLPVLESLFIEGCKNLKSILISEDVSGKSLSFLKSIKIWDCNELESFPAGGLATPNLVYIALWKCKKLHSLPETMNTLTGLQYMEIDNLSNLQSFVIDDLPSSLLKLTVGSVGGIMWNTEPTWEHLTSLSVLRINGNDTVNTLMAALLPVSLVTLCICGLDGTSFDGKWLQHLTSLQNLEIVKAPKLRSLPKNGLPSSLSVLHEKDKQQLTSNMLGLSKHIQDTTNNCLDSRDAALVEYKAQVLLFAFAQLEVDSSNGSCHRSSGNIQGCITVTRSVHSNKLISHSISCNRHRHYHQTITTANQIFHRRRLPITTVSSFLSRVSHPLPEKSRRLKLTLHLLFFTTQLEEKDAEIFELRTKVFNRRKCKHIFCIDCICKYVAVQINDNAYKVTCPSPSCRVKFKPKHLQRILPKQLVAKWKYLISEVSTPSKPKIYCPFPNCSVLLGKNGDLKGESKCPSCHRDFCAQCKVPWHAGMSCQTFQQLKKNDKNDSDNKFMELVDRNKWQRCPNCSMYVKRSEGCSIIKCRCGCKFCYKCGKKRSYAPHTCNSS 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00911 1323 ProSiteProfiles TRIAD supradomain profile. 1119 1323 IPR044066 -
Tsu03g00911 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 227 IPR027417 -
Tsu03g00911 1323 SUPERFAMILY RING/U-box 1135 1199 - -
Tsu03g00911 1323 ProSitePatterns Zinc finger RING-type signature. 1140 1149 IPR017907 -
Tsu03g00911 1323 SMART ibrneu5 1190 1251 IPR002867 -
Tsu03g00911 1323 SUPERFAMILY L domain-like 291 713 - -
Tsu03g00911 1323 Gene3D - 1 121 IPR027417 -
Tsu03g00911 1323 Gene3D - 1248 1323 - -
Tsu03g00911 1323 SUPERFAMILY RING/U-box 1265 1320 - -
Tsu03g00911 1323 Gene3D - 130 212 IPR042197 -
Tsu03g00911 1323 Gene3D - 213 301 IPR036388 -
Tsu03g00911 1323 SUPERFAMILY RING/U-box 1206 1256 - -
Tsu03g00911 1323 Pfam IBR domain, a half RING-finger domain 1199 1251 IPR002867 -
Tsu03g00911 1323 Gene3D Ribonuclease Inhibitor 699 1015 IPR032675 -
Tsu03g00911 1323 SUPERFAMILY L domain-like 705 985 - -
Tsu03g00911 1323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1121 1204 IPR013083 -
Tsu03g00911 1323 Pfam NB-ARC domain 1 224 IPR002182 GO:0043531
Tsu03g00911 1323 PANTHER DISEASE RESISTANCE PROTEIN RP 1 853 IPR044974 GO:0006952
Tsu03g00911 1323 PRINTS Disease resistance protein signature 648 664 - -
Tsu03g00911 1323 PRINTS Disease resistance protein signature 166 180 - -
Tsu03g00911 1323 PRINTS Disease resistance protein signature 68 82 - -
Tsu03g00911 1323 Gene3D Ribonuclease Inhibitor 331 694 IPR032675 -
Tsu03g00911 1323 PANTHER OS05G0414200 PROTEIN 1 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00911 Tsu-Chr3 8463572 8472415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00911 1135 1310 C3H Transcription Factor Family AT2G19610 29.255 6.24e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00911 - - mtr:MTR_0603s0010 1291.56