Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00908 ATGAAAGAAGCACATGTAGGTGGTGGTGATCATATAAAGATCACTAACCACTCTTCAATTAGTCCTCATTTGACTGCAATTGATAGATTCTTATGGAGTCAACAAAACCATAACCCTCAAAAGAAATTTCAACAAAGTGTTGATGATCAAAATATGTGTAGCTTTGGTTATTCTAATGCTTCAACCTATAGTTTTATGTGGCCTAATAGTAATAACATGATCATGACTCAAGAAGCTAGCTTTGTTGATCATCTATTGGCAAATGAAGAGGTGATGAATTGGACACACCAAATTCCTTCATTGTGTGTTGAGAATGAAGATGTGGTCAATGGTTTAGGGAAGGGTGCAAATGTGGTTGGAAGAAAACCTAAGAAAGtgccttctttttctttgatcAAAGGACAATGGACCGAAGAAGAAGACAgGAAATTGGTGAAATTGGTGAAGCAATATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTCGAGAGAGATGGCATAATCATCTAAGGCCTGATATTAAAAAAGATAGTTggagtgaagaagaagaaaggataCTAGTAGAAAGTCATGGCACGATTGGAAACCGTTGGGCTGAGATAGCAAAGAAAATTCCTGGAAGAACTGAGAATGCAATCAAGAATCATTGGAATGCAACAAAAAGGAGACAAAATTCAAGGAGAAAGAACAAAAGACCTCAAACCACAAATGGTAAACCACAATCTTCTATTCTCCAAGACTATATCAAAACTTTGACTCAAAAACCGTccactactactactactaccacTACTACTGCTGCGTCTAGCTCCACGTCAGCAATCTCTGAGGACCCTTCTTCAAACCAATCCCACCTTGCTTTTTCCAATCTTTCTCATGAAAATTCATCTTCACCACTTATAGTTGAATCTTATGATGATGAACTTCTCTTCATGCAACAACTTTTCAAGGTGAATAATAATGCTGAGCCAGTTAACCCCTACTCCAAGAAACACACTTCAAACTCTTATTCATTGGATTATTCTTCTCAAACTAATAACAATAATCAGATTCTCTCTGATGTTACTGATCATGGTTTTGTTCATTCTAATTCCAATTACCCTATGATGAATTACCTTAATTCTGATCACTACTTTTCACCAATGCTTAATGGAATTCATCACAACCAGAGTAATGTGGAGTTGCAACTTGGGAATATGAATTATTCAGATGGAAAGAGAGAGATGGATTTGTTGGAGTTGGTTTCTTCTGCTCagtttttttaa 1293 0.3465 MKEAHVGGGDHIKITNHSSISPHLTAIDRFLWSQQNHNPQKKFQQSVDDQNMCSFGYSNASTYSFMWPNSNNMIMTQEASFVDHLLANEEVMNWTHQIPSLCVENEDVVNGLGKGANVVGRKPKKVPSFSLIKGQWTEEEDRKLVKLVKQYGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVESHGTIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKRPQTTNGKPQSSILQDYIKTLTQKPSTTTTTTTTTAASSSTSAISEDPSSNQSHLAFSNLSHENSSSPLIVESYDDELLFMQQLFKVNNNAEPVNPYSKKHTSNSYSLDYSSQTNNNNQILSDVTDHGFVHSNSNYPMMNYLNSDHYFSPMLNGIHHNQSNVELQLGNMNYSDGKREMDLLELVSSAQFF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00908 430 ProSiteProfiles Myb-like domain profile. 133 179 IPR001005 -
Tsu03g00908 430 Pfam Myb-like DNA-binding domain 136 193 - -
Tsu03g00908 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 183 IPR017930 -
Tsu03g00908 430 ProSiteProfiles Myb-like domain profile. 180 230 IPR001005 -
Tsu03g00908 430 SMART sant 184 232 IPR001005 -
Tsu03g00908 430 SMART sant 132 181 IPR001005 -
Tsu03g00908 430 MobiDBLite consensus disorder prediction 216 295 - -
Tsu03g00908 430 CDD SANT 187 230 IPR001005 -
Tsu03g00908 430 PANTHER MYB TRANSCRIPTION FACTOR 54 401 - -
Tsu03g00908 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 234 IPR017930 -
Tsu03g00908 430 SUPERFAMILY Homeodomain-like 130 226 IPR009057 -
Tsu03g00908 430 MobiDBLite consensus disorder prediction 331 352 - -
Tsu03g00908 430 MobiDBLite consensus disorder prediction 244 295 - -
Tsu03g00908 430 CDD SANT 136 179 IPR001005 -
Tsu03g00908 430 PANTHER MYB PROTEIN-RELATED 54 401 - -
Tsu03g00908 430 Gene3D - 132 184 - -
Tsu03g00908 430 MobiDBLite consensus disorder prediction 229 243 - -
Tsu03g00908 430 Gene3D - 186 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00908 Tsu-Chr3 8378498 8381280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00908 21 427 MYB Transcription Factor Family AT5G11050 38.799 2.61e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g00908 Myb_DNA-bind_6 3.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00908 K09422 - gmx:100786295 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00908 03 8378498 8381280 Tsu03g00908 03 8378498 8381280 ECH