Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00904 ATGCCTTCAATTGCTTCTAAACGTAAACTCAGATCTAATTCAACAACACCTCTTCCAACCACCGCTTCTGCGCCTACTCGTAAATCACCCCGCCGTTGCACCGCTGCAACTCCCAATTCTGTTACAACTGTTACATCCGTAGTTCGCAAGATCCTCACCGATGAGAATCATATCGAATCGTGTGAAATTGAATCTGCTTCCGTTAAATCTCGATGGAATCCCAAAGatggtgagcAATTGAGGATGGTGAAGGAAGTGATGCACTTGTCTACAGCACCGTCTACGATGGTGTGCCGTGAAGAAGAGCAAAATGTGGTGTTGGGATTTTGTAAAGGTTGTGTTGAACATGAAAAGGCTGGGAGTCTTTATATATGTGGGTGTCCTGGAACTGGGAAATCGTTATCTATGGAGAAAGTGAAAGTGAATTTACTCGATTGGGCTAAAGAGGGAGGTTTTCCCGTGCCGGAGGTTTTATCTGTAAATTGTACATCCATGTCAAATACAACTGATATTTTCACAAAGATACTTGGGTTACACAAAACCCTGGGAACAAAGGGTTCAGGCACACCCTTAAAGCAACTTCAGAACTTGTATTCTCATAAATCGCCTACAACGAACATGATATTGATAGTAGCAGATGAATTAGATTATCTAATAACCAAAGACAGAGCTGTGCTCCATGATCTTTTCATGCTCACCACATTCCCGTTTTCCAGATGTATATTGATAGGTGTAGCAAATGCAATTGACCTAGCTGATCGATTTCTTCCAAGGCTTACTGCATTAAATTGCAAGCCTACTGTTGTAACTTTTCGGGCATACACTAAAGATCAGATCCTTAGGATTCTTGAAGAGAGGCTAAATGAACTTCCTTACACTGTCTTCCAACATCAAGCATTGGAACTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGAGATATGCGAAATGCTCTCTCTATATGCAGgAGTGCAATAGAGATGCTAGAAGCAGAAATTAGAGATTCTGGTTGCAATTTGAATACTTTGGAAGAGAAATCATCCTCAGAACAAAATCTCCCTACAGCTCCggattttgttaaaaaacaaGAATTTGATATGGTAAGGATTGATCATATGGCTCGTGCCTTGTCCAAAACATATAGATCACCAGTAGTGGATACAATACAATCtctgccacatcatcaacagATTATACTCTGCTCTTCAATGAAACATTTCCGCGGATCCAAGAAAGACTCAAACCTTGGCGAGTTATATAAATCTTATGCTGGTATATGCAAATCATCACTAATTCCCCCGGCTGGAATCATGGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGGCCTTATTAAACTAGGACAATCCCGAGACGATAAATTGAGAAGAGTGACACCCAAAGTAGATGAAGGAGATATCAGTTTTGCATTGCAGGGAATCCGCTTTTTTCGCAATTGTCTTCAATGA 1470 0.3966 MPSIASKRKLRSNSTTPLPTTASAPTRKSPRRCTAATPNSVTTVTSVVRKILTDENHIESCEIESASVKSRWNPKDGEQLRMVKEVMHLSTAPSTMVCREEEQNVVLGFCKGCVEHEKAGSLYICGCPGTGKSLSMEKVKVNLLDWAKEGGFPVPEVLSVNCTSMSNTTDIFTKILGLHKTLGTKGSGTPLKQLQNLYSHKSPTTNMILIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTALNCKPTVVTFRAYTKDQILRILEERLNELPYTVFQHQALELCARKVAAASGDMRNALSICRSAIEMLEAEIRDSGCNLNTLEEKSSSEQNLPTAPDFVKKQEFDMVRIDHMARALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRGSKKDSNLGELYKSYAGICKSSLIPPAGIMEFSNMCRVLNDQGLIKLGQSRDDKLRRVTPKVDEGDISFALQGIRFFRNCLQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00904 489 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 12 488 - -
Tsu03g00904 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 332 IPR027417 -
Tsu03g00904 489 CDD AAA 114 260 - -
Tsu03g00904 489 CDD Cdc6_C 392 474 IPR015163 -
Tsu03g00904 489 Gene3D - 76 266 IPR027417 -
Tsu03g00904 489 MobiDBLite consensus disorder prediction 1 38 - -
Tsu03g00904 489 SUPERFAMILY "Winged helix" DNA-binding domain 384 487 IPR036390 -
Tsu03g00904 489 SMART Cdc6_C_2 399 478 IPR015163 -
Tsu03g00904 489 Gene3D - 384 475 IPR036388 -
Tsu03g00904 489 Coils Coil 325 345 - -
Tsu03g00904 489 PIRSF Cdc6 2 489 IPR016314 GO:0006270|GO:0051301
Tsu03g00904 489 Pfam CDC6, C terminal winged helix domain 399 477 IPR015163 -
Tsu03g00904 489 Pfam AAA lid domain 296 330 IPR041083 -
Tsu03g00904 489 Pfam AAA domain 117 234 IPR003593 -
Tsu03g00904 489 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 12 488 - -
Tsu03g00904 489 Gene3D - 267 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00904 Tsu-Chr3 8324575 8329073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00904 7 488 Core DNA Replication Machinery Family AT2G29680 58.517 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00904 K02213 - gmx:100791200 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00904 03 8324575 8329073 Tsu03g00904 03 8324575 8329073 ECH