Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00900 ATGTTCTCATTTCATTTAACTCCTCTTTCATCTTATTTCCATTTAtcaccacacacacacacacaaaacacTCTCATGGAGAATTCATGGGAACAAAGTGTCACATATTCTATCAACACAATCTACCTTCTTTTCTCTGCCTATTTAGTTTTTGTAATGCAACTAGGATTTGCCATGATATGTGCAGGATCTGTCCGTGCCAAAAATGCAATGAACATAATGCTCACAAATGTAGTTGATGCAGTGGTAGGTAGCATTTCTTTCTATCTTTTTGGTTTTGCATTTGCTTATGGCAATTCCAACCCTTTCATTGGTACAAATTTGTTTGCTTTAGCTAATATTCCAAATGAAAATTATGACTATGGATTCTTCCTTTACCAATGGGCTTTTGCTATAGCTGTAGCTGGTATCACTAGTGGGTCTATAGCTGAGAGAACCCAATTTAGTGCTTatcttgttttttcatttttccttACTGGGTTTGTGTACCCAATTGTGGCTCATTGGGTTTGGTCATCTAGTGGTTGGCTTAGTCCCAATTCAAGTGATTTGTTCTTGGGGTCAGGTTCCATTGACTTTGCTGGGAGTGGAGTGGTGCATTTGGTTGGTGCAATTGCTGGACTATGGGGATCTATCATAGAAGGTCCGCGGGTTGGGAGGTTCGATGCTTATGGAAAGCCCGTACCTTTCCGCGGCCACAACGCCGCACTTGTGGTTCTTGGGACTTTCTTATTGTGGTTTGGTTGGTTTGGGTTTAACCCTGGTTCATTTGACAAAATTCTCGTAGCCTACCCTGACACACCTGATGAAGGTAATTGGACTTCGATTGGCCGGACTGCTGTGACAACCACATTGGCAGGCTCAACAGCTGGAATCGTCACGTTGTTTGGCCGTCGATTATTGATTGGCCACTGGGATGCAATGGATGTGTGTAATGGTTTGCTTGGCGGGTTTGTTGCCATCACATCTGGGTGCTCAGTTGTCGAACCATGGGCCGCTATTCTATGTGGATTCGTCTCAGCATGGGTGTTAATTGGACTCAACATCTTGGCACTAAAATTGAACTATGATGACCCATTAGAGGCAGCCCAATTGCATGGTGGATGTGGCACTTGGGGTTTGTTGTTTACAGGGTTGTTTGCCAAAAAGAAGTTTGTGAATCAAACCTATAATTCAGGAGTGGCAGTGGAAAGACCTTATGGTCTTCTACTTGGAGGTGGATGGGGATTGATTGGAGCTCAAGTAGCTGAAATTTTGGTAATCTTTGTATTTGTTAGTACAACAATGGGCCCTATGTTCTATGCCTTGCACAAGCTTAAATTACTAAGAATTCCTGTACATGATGAACTTGCTGGCCTTGATATATCAAGCCATGGAGGCTATGCTTATGCTCCTCAAGAGGAAAATCATCCTCGATCTTACGGAGATTATTTGCGCATGCAGGAAGATCAATCATAG 1458 0.415 MFSFHLTPLSSYFHLSPHTHTQNTLMENSWEQSVTYSINTIYLLFSAYLVFVMQLGFAMICAGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGNSNPFIGTNLFALANIPNENYDYGFFLYQWAFAIAVAGITSGSIAERTQFSAYLVFSFFLTGFVYPIVAHWVWSSSGWLSPNSSDLFLGSGSIDFAGSGVVHLVGAIAGLWGSIIEGPRVGRFDAYGKPVPFRGHNAALVVLGTFLLWFGWFGFNPGSFDKILVAYPDTPDEGNWTSIGRTAVTTTLAGSTAGIVTLFGRRLLIGHWDAMDVCNGLLGGFVAITSGCSVVEPWAAILCGFVSAWVLIGLNILALKLNYDDPLEAAQLHGGCGTWGLLFTGLFAKKKFVNQTYNSGVAVERPYGLLLGGGWGLIGAQVAEILVIFVFVSTTMGPMFYALHKLKLLRIPVHDELAGLDISSHGGYAYAPQEENHPRSYGDYLRMQEDQS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00900 485 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 3 26 482 - -
Tsu03g00900 485 SUPERFAMILY Ammonium transporter 36 444 - -
Tsu03g00900 485 TIGRFAM amt: ammonium transporter 39 463 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tsu03g00900 485 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519|GO:0016020|GO:0072488
Tsu03g00900 485 Pfam Ammonium Transporter Family 43 463 IPR024041 GO:0008519|GO:0016020|GO:0072488
Tsu03g00900 485 Gene3D Ammonium transporter AmtB like domains 15 477 IPR029020 -
Tsu03g00900 485 PANTHER AMMONIUM TRANSPORTER 26 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00900 Tsu-Chr3 8290130 8292240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00900 32 469 Inorganic Solute Cotransporters AT1G64780 66.517 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00900 K03320 - jre:118344481 780.785