Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00899 ATGCACACACAAAAGTTTCCGGGAAAAAATATGGGAAAAAGTTCATTTCAAGAATCTCTGAAAGCTCTAGAAGCTGATATTCAGTATGCTAATACActGGCATTAAGCCATCCAAGGGATAAAGAAGGAGGATGCTTTCAGATGAGGCTATCATACAGTCCAGTTGCTCCAATTTTTCTCTCACTTGTTCAATGGACCGATTACCGACTTGCCGGTGCTCTTGGTTTGCTgagaattttaatttatgtgACATATGGAAATGGGAAGACTACTATTTCAATATatgaaaggaaagcaagcataaGACAATTTTATTcTGTTATATTTCCTGCTCTATTGCAACTTCAAATGGGCATAACAGATGTGGATGAAAGGAAACAGAAAGAAGAATATGCTATTAAATACCAAAAGAAGAATGATTTCAAAGATTGGAAAGAATCTGAAATTGACATTGAAAGAGATCAAGAATGTGGAGTTTGTTTGGAGGTGAAAACAAAAGTTGTTTTGCCTAATTGTTGCCACCAAATGTGTTTCAACTGTTACAAAGACTGGTGTCTTAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCTTGAAGAGAGTAAACTCTTGTGACCTTTGGATTTACACAGACACAAGTGATATTGTTGATGTTGGAACAATTTTCAAAGAGAATAGtaagattttgtttctttacaTAGAAAAGTTGCCTCTAATTATTCCAGACCCAAGACATGTATCCTATGATCCATTTTTTAGATAA 762 0.336 MHTQKFPGKNMGKSSFQESLKALEADIQYANTLALSHPRDKEGGCFQMRLSYSPVAPIFLSLVQWTDYRLAGALGLLRILIYVTYGNGKTTISIYERKASIRQFYSVIFPALLQLQMGITDVDERKQKEEYAIKYQKKNDFKDWKESEIDIERDQECGVCLEVKTKVVLPNCCHQMCFNCYKDWCLRSQSCPFCRDSLKRVNSCDLWIYTDTSDIVDVGTIFKENSKILFLYIEKLPLIIPDPRHVSYDPFFR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00899 253 SUPERFAMILY RING/U-box 139 200 - -
Tsu03g00899 253 SMART ring_2 157 194 IPR001841 -
Tsu03g00899 253 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Tsu03g00899 253 Pfam Zinc finger, C3HC4 type (RING finger) 154 200 - -
Tsu03g00899 253 PANTHER RING FINGER PROTEIN 41, 151 11 253 - -
Tsu03g00899 253 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Tsu03g00899 253 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 253 - -
Tsu03g00899 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 206 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00899 Tsu-Chr3 8286753 8289589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00899 155 228 RAD5 or RAD16-like Gene Family AT5G43530 42.500 4.24e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00899 - K25840 gmx:100808567 415.616