Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00898 atGGCAGGGCTTGATTTCGACGCGATTGCAGAAACGGGAAGAGGACACTCATTCGTAAGGGCATCAAATGCCGAATGggtggaagaagatgaacaagaCCTTCAAATGTACTCTCTTCTAAGATTGCCTACGCAAAAGCGTATCAATTTGGCATTAATGAGGAAACCATCTCAAGAATTTCATGATTCAGAAAGTTCAAGTGACACAAAAAGTAAAATGGAACAAATTGATGTTAGAAAGTTGAATCGTGTTTATCGTGAACGTGTTGTTAAGGAAGCTTTGGCTACCAATGAACAAGATAATTATAAGCTTCTTTCCGCCATCAAGGAACGATTTAATAGGGTTGGAATGGAAGTGCCAAATATTGAAGTGAGATTCAGAAACTTGACAATTGAAGCTGAAGTTCATATTGGTACAAGAGCTTTACCAACTTTGATCAATTACACACGAGATGCTCTTGAGGGTTTTGTTTTTGGGATAGGTCGACCTAAAAGACATTCTTTGACCATCTTGAATGATATCAATGGTGTCATCAAACCTGGAagGATGACATTGTTATTAGGACCTCCAGGATCAGGCAAAACTACTTTACTTTTGGCTCTTGCTGGAAAACTTGAATGCGACCTCAAGAAAAGTGGTCGTATAACATACAACGGACATGAGCAAAAACAATTTTGTATTCAAAGAGCTTCCGCATACATTAGCCAAATCGATAATCACATCGCAGAACTAACAGTGAGAGAAACTTTTGATTTTGCAAATAGATGTCAAGGTTCTGGTGATCCAGAGTTACTGAAAACCCTGGAAAgcttagaaaaagaaaaaaaggtgatGCCAAGTCCGGAAATTCATGCATTTATGAAGGCATCATGTGTTGGTGGCAAAAGGCACAATGTGATGACAGATTATATTTTGAAAGTACTTGGTCTTGATGTATGTTCTGATACTGTTGTTGGTAGTGATATGATAAGGGGGATATCTGGTGGCCAAAAGAAGAGAGTAACAACAGGAGAAATGATTGTTGGACCAAGAAAAACTTTGTTTATGGATGAAATATCAACTGGACTTGATAGCTCTACAACATTCCAAATAGTAAAATGCTTAAGAAATTTTGTTCATCAAATGGAAGCTACTGTACTAATGGCTCTTCTTCAACCTGCACCGGAGACATTTGAGCTCTTTGATGATCTCATACTTTTATCCGATGGACGTATAGTATATCAAGGTCCTAGAGAACATGTGGTAGAGTTTTTTGAATCATTAGGTTTCAAACTCCCACCGCGCAAAGGTGTTGCAGATTTTCTTCAAGAGGTAACATCTAAAAAAGATCAAGCACAATATTGGGCTGATTCTTCAAAGCCGTATGAATTTATTTCAGTACAAGAGATTACAGAAGCCTTCAAAAATTCCAAATTTGGAAAGTCTATGGAAGCTATGTATACTGCTCCCTATGATAAATCAAAAAGTCATCCTTCAGCTTTGCCTAAATCAAGATTTTCTGTCTCAAATTGGGATCTTTTTAAGGCTTGTATGTCGCGGGAATTGACCTTGCTCAGCAGGAATCGTTTTCTTTACATTTTTAGAACCGGTCAGGTTGCATTTGTTGGATTTGTCGTGTCCACGATGTTcctaaaaatgaaaacttatCCTAAGAACGAAGTTTATGGAAATCTCTACCAATCTTCACTATTTTATGCATTGGTGCACATGTTGTTTAACGGAACTTCTGAGTTGTCTCTTTTGATATTTCGGCTACCTGTCTTTTATAAACAAAGAGGAAATTTATTTTATCGAACATGGTCATGGACATTGTCAACTTGGATTCTTCAAATACCTTATTCCATTGTTGAAGCTGTTGTGTGGACTTGTGTTGTATACTACACTATTGGATTTGCTCCTGCTGTTGGGAGGTTCTTCCGCTACatgcttttgttgttttggGTGCACCAAATGGCATTAAGTCTCTTTCGAGTTATGGCTGCTCTCGGACGTGATATGATCATTGCTAATACAATCAGTTCAGGTGCATTGATGATTTTATTCTTGCTGGGAGGATTTGTTGTCCCAAAAGATATGATTAAGCCGTGGTGGGCTTGGGGTTACTGGTTATCACCTCTTAATTACGGGCAAAGAGCGATTTCGGTCAATGAATTTACTGCCACAAGATGGACGAAACCTTCGACTTTAGGGACCGACACAGTTGGTCACAATATACTCAAGTCATTCAGTTTACCGATTGAAGATTACTGGTATTGGATTAGTTTGGGAGTTTTAGCACTCTACACATTGTTTTTCAACATCGTGACCACTTTAGCACTGACATATTTGAACCCGCTCAAAAAACCAAGAGCAGTTTCTCAGGATGAGGACTCACAAAATAGTTCTGATAGAGTTCATAATGAATCACCAAAAAGTTCCAAAAATAAGGGAATGATTCTTCCTTTTGAACCATTGACAATGACCTTCCACAATGTCAATTATTATGTCGATATGCCAAAGgaGATAAGTAAACAAGGTGTAACCGAAACTAGGTTGAAGCTGTTGTCAAATGTGAGTGGTGTTTTTGCACCGGGTGTACTTACGGCATTAATGGGATCAAGTGGAGCTGGGAAAACCACTTTAATGGATGTTCTTGCAGGAAGGAAAACAGGAGGATATATCGAGGGCGATATTAAAATATCTGGTTATCCAAAAGTTCAACACACATTTGCCAGAATAGCCGGATATGTCGAGCAAAATGACATACATTCTCCTCAAATGACAGTTCAGGAGTCTCTATGGTTTTCTGCATCATTAAGGCTTCAAAAAGAaGAATTTGTTGAACAAGTAATGAAACTAGTTGAACTTGATAGTTTAAGACATGCTATAGTTGGAATGGCTGGAACTTCTGGCTTATCAACAGAGCAGAGAAAGAGATTGACAATTGCAGTGGAACTTGTAGCAAACCCTTCAATAATTTTCATGGACGAACCTACATCCGGACTTGATGCACGTGCGGCTGCCATTGTTATGAGAACTGTTCGCAATACAGTTGATACTGGAAGAACTGTTGTTTGTACCATACATCAACCAAGTATTGATATATTTGAAGCATTTGATGAGTTACTTCTTATGAAACGTGGAGGACAAGTTATATATGGGGGGAAGATTGGTAACCAATCAAATGTGATGATAAATTATTTTCAGAGTATCGATGGAATTTCGCCAATTTCCAGTGGCTACAATCCAGCTACTTGGATGCTTGAGGTTACCACACCAgctattgaagaaaaaattggtGTAGACTTTACAGATGTTTACGAAAATTCTGAACAATTCCGGTCGGTGGAAGCTTCGATTAGACAATACGAACAACCATCTCCTGGATCACAACCATTGAAGTTTGCCACATTGTATTCACAAAATACATGGTCACAATTTGAAAAGTGTTTATGGAAGCAGAATATTTTGTATTGGAGAAATCCATCATACAATGCAATAAGGATGTTTTTTACAATATTGTCCGCTTTGTTATTAGGTTCAATATTTTGGAATATCGGTTCAAAAAGAGAAACAACTCAAGAAGTGATGGTAATAATGGGtgcatatttttcttcattattgTTCCTTGGGGTGAAAAATGCATCTTCTGTACAACCGGTTGTTTCAGTCGAAAGGACGGTTTTCTATAGAGAAAAAACAGCTGGAATGTACTCTCCAATTGCTTATGCAGCAGCTCAGGGGCTGGTGGAAATCCCATACCAAGTTGTTCAGACATTAGTATTTGGTGTAATGACATATTTCATGATGGGTTTTGAAAGGAATTTTGGAAAGTTTTTACTATATCTTGTGTTCGTGTTCCTCACATTTACCTATTTCACATTTTACGGCATCATGGCTGTTGGTCTCACACCTACCCAACATCTCGCAGCTGTTACTTCTTCTGCATTTTACTCTCTATGGAATCTTGTTTCAGGTTTTATTATTCCAAAAGCGTATATTCCTGGATATTGGCTTTGGTTCCATTATCTCTGCCCAGTTTCTTGGACACTACGCGGTATCATAACATCTCAATTCGGAGATGTAGAAGATATAATTGAAGGACCAGGATTTAAGGGCACTGTGAAACAATATATATCTGTTTCTCTTGGCTATGATGATACAATTAATGGTGTTTCAGCAGTGTGGATTTCAGCAATTGTGCTTCTTGGCTTTGTTATATTCTTCTTTGGTTCCTTTGCTATATCAGTTAAAGTATTGAATTTCCAAAAGAGATGA 4257 0.3707 MAGLDFDAIAETGRGHSFVRASNAEWVEEDEQDLQMYSLLRLPTQKRINLALMRKPSQEFHDSESSSDTKSKMEQIDVRKLNRVYRERVVKEALATNEQDNYKLLSAIKERFNRVGMEVPNIEVRFRNLTIEAEVHIGTRALPTLINYTRDALEGFVFGIGRPKRHSLTILNDINGVIKPGRMTLLLGPPGSGKTTLLLALAGKLECDLKKSGRITYNGHEQKQFCIQRASAYISQIDNHIAELTVRETFDFANRCQGSGDPELLKTLESLEKEKKVMPSPEIHAFMKASCVGGKRHNVMTDYILKVLGLDVCSDTVVGSDMIRGISGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMEATVLMALLQPAPETFELFDDLILLSDGRIVYQGPREHVVEFFESLGFKLPPRKGVADFLQEVTSKKDQAQYWADSSKPYEFISVQEITEAFKNSKFGKSMEAMYTAPYDKSKSHPSALPKSRFSVSNWDLFKACMSRELTLLSRNRFLYIFRTGQVAFVGFVVSTMFLKMKTYPKNEVYGNLYQSSLFYALVHMLFNGTSELSLLIFRLPVFYKQRGNLFYRTWSWTLSTWILQIPYSIVEAVVWTCVVYYTIGFAPAVGRFFRYMLLLFWVHQMALSLFRVMAALGRDMIIANTISSGALMILFLLGGFVVPKDMIKPWWAWGYWLSPLNYGQRAISVNEFTATRWTKPSTLGTDTVGHNILKSFSLPIEDYWYWISLGVLALYTLFFNIVTTLALTYLNPLKKPRAVSQDEDSQNSSDRVHNESPKSSKNKGMILPFEPLTMTFHNVNYYVDMPKEISKQGVTETRLKLLSNVSGVFAPGVLTALMGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKVQHTFARIAGYVEQNDIHSPQMTVQESLWFSASLRLQKEEFVEQVMKLVELDSLRHAIVGMAGTSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKIGNQSNVMINYFQSIDGISPISSGYNPATWMLEVTTPAIEEKIGVDFTDVYENSEQFRSVEASIRQYEQPSPGSQPLKFATLYSQNTWSQFEKCLWKQNILYWRNPSYNAIRMFFTILSALLLGSIFWNIGSKRETTQEVMVIMGAYFSSLLFLGVKNASSVQPVVSVERTVFYREKTAGMYSPIAYAAAQGLVEIPYQVVQTLVFGVMTYFMMGFERNFGKFLLYLVFVFLTFTYFTFYGIMAVGLTPTQHLAAVTSSAFYSLWNLVSGFIIPKAYIPGYWLWFHYLCPVSWTLRGIITSQFGDVEDIIEGPGFKGTVKQYISVSLGYDDTINGVSAVWISAIVLLGFVIFFFGSFAISVKVLNFQKR 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00898 1418 Gene3D - 153 469 IPR027417 -
Tsu03g00898 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 820 1065 IPR003439 GO:0005524
Tsu03g00898 1418 Gene3D - 833 1059 IPR027417 -
Tsu03g00898 1418 MobiDBLite consensus disorder prediction 785 804 - -
Tsu03g00898 1418 Pfam ABC-2 type transporter 385 438 IPR043926 GO:0140359
Tsu03g00898 1418 PANTHER ABC TRANSPORTER G FAMILY MEMBER 31 19 1418 - -
Tsu03g00898 1418 Pfam Plant PDR ABC transporter associated 723 785 IPR013581 -
Tsu03g00898 1418 Pfam ABC-transporter N-terminal 64 147 IPR029481 -
Tsu03g00898 1418 CDD ABCG_PDR_domain1 160 409 IPR034001 -
Tsu03g00898 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 435 IPR027417 -
Tsu03g00898 1418 Pfam ABC transporter 848 993 IPR003439 GO:0005524
Tsu03g00898 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1048 IPR027417 -
Tsu03g00898 1418 PANTHER ATP-BINDING CASSETTE TRANSPORTER 19 1418 - -
Tsu03g00898 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 427 IPR003439 GO:0005524
Tsu03g00898 1418 SMART AAA_5 857 1042 IPR003593 -
Tsu03g00898 1418 SMART AAA_5 180 411 IPR003593 -
Tsu03g00898 1418 CDD ABCG_PDR_domain2 817 1048 IPR034003 -
Tsu03g00898 1418 Pfam ABC transporter 171 352 IPR003439 GO:0005524
Tsu03g00898 1418 Pfam ABC-2 type transporter 506 718 IPR013525 GO:0016020|GO:0140359
Tsu03g00898 1418 Pfam ABC-2 type transporter 1139 1352 IPR013525 GO:0016020|GO:0140359
Tsu03g00898 1418 MobiDBLite consensus disorder prediction 785 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00898 Tsu-Chr3 8270069 8278811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00898 163 416 Calmodulin-binding Proteins AT2G36910 19.922 1.97e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00898 K08711 - gmx:100805373 2202.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00898 03 8270069 8278811 Tsu05g02757 05 37646147 37654739 PCT