Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00890 ATGACACCAACCATAACTCTTATTTTCATCTTCACCTTTATTTTCACCATAACCACCGTAAACAGCCTCGGCATTGCCTCCACTACCGCCATAACCTACAATACCTCCACCATCTGCGGCATAGTTGCCGGTAAGCCTCACCAATATATCCAATGctaccaaaacaaaaaactcatTCCACTAATCCTTCCCAATGTTTCCTTTAAGTCCATTTCTGGTGGCCGCAGTTTCTTCTGCGGCCTCCGTTCTAATGGACTGAGTTTTTACTGTTGGGATACAAGGAACCCAAAGTCTTTTCTCGAACCTAGAAGATTGTATCACAGTGAAAATGTTCAGTTGAGTGATGTAGCTGTTGGTGATGATCAAGTTTGTGCTAGAGAGTTACATTCTGGTGTGGTAAGGTGTTGGAGAGGCTATGGTGGAAATAATGGAGTTGAGTTTCCTTCTCCTGATCAAAGTTTTCGGTTTCGAACCGTTACTTGTGGTTATGGTTTTTGTTGTGGGATATTAAAGGTGTCTAATAGAGTTTTTTGTTGGGGTGAAAATGGAGAAAATGGTGTTGAGAATTTGATTCAGAAACAGTTTGAGAATTTATCAATGTCAACATTGGTTTCTGGTGTGTCACATGTTTGTGGTTTGAATCTTAATGGTGATTTGATTTGTAAAGGGAAGAACAACAATGATGATGATTCTGGTAAGTTAAATGTTCCTTCGAATTCTGGTTCTGTTTTTTCACATCTTGCTTTAGGTGAAAATTTCACTTGTgctattagaataaaaaatggatttatTCAATGTTGGGGTGGTGATTTTGGTATTGATTTTGATAGTGATAATGTGCATAATCATGTGATGAAAGGTGTTTCTTTTGAGTCAATTGTTGCTGGTTTGGATTTTGTTTGTGGTTTAACAACTAAGGATTTGTCTCTAATTTGTTGGGGTAATAATCCTAATTGGCATACTAAGCATCATTTGAAGAGTGATGTTTATGTTCCATTAGGAATGATTCTTCCTGGTCCATGTGTTAAGAATGATTCTTGTAGATTTTGTGGTGTGTATCCAAATTCTGATTTTCTTTGTCATGGATTTGGAAATATTTGTAATCAATGTCGAATCGAGCTTCCGGTTGCCATGCGATTGCCGCcaacaatatcatcatcatcatcatcatcatcacctaATAATCAACCTTCTTCAGataataatgaagaaaaaagatCAAGGGGATGGAAACTGAAGATGTTTCTGATTATTGGATCAGTTGGTGCTTTTGCTGGTTTATGCACTATTCTTTATTTTGTTATGATTGGTGGTAGAAGATTGTTAAAGGCGAAAATCGATAATTCGGTTCAACCTACAAGTAGTGAATCTGATAATGCTTATGTTGATATAGCTCCAATGCAAAATGTTGgtactattaataataatggaACATCAACATTAAGATCTTTTTCTAGTAAAAGACATAGTTCAAGTAGATTAAGAAGTGGTTCATCTTCAAAGCAATTAGATAGAACTGAGAGTTTCTCATTTTGGGAATTAGTTGCAGCTAGTGACAATTTCTCAACGGAAAACAAAATCGGTTCCGGTAGTTTCGGGTCTGTTTACAAAGGGAGACTAATCGACGGTCGTGAAGTTGCAATTAAACGAGGCGATACTTGCTTGAGGAAGAAGaaatttcaagaaaaagaaCTTGCTTTTGATTCTGAGTTAACTTTGTTGTCAAGGCTTCACCATAAGCATTTGGTGAGACTAATTGGTTTCTGTGAAGAGAATGATGAGAGACTTTTGGTTTATGAGTATATGAGTAATGGATCGTTACACGATCATTTGCATGATAAGGACAATGTTGAGAAAAATAGTAGCATTATGAATTCATGGAAAATGAGAATCAAAGTTGCATTAGAGGCTGCAAGAGGGATTGAGTACCTTCATAACTACGCGGTACCGCCGATTATTCATAGGGATATTAAATCCTCAAATATACTTATTGACTCAAATTGGAATGCTAGGGTTTCCGATTTCGGATTATCGTTAATCTGGCACGAAACCGAACAAGAATCAATGTCGAATATACAAGCGGTCGGAACCGTTGGTTATATAGATCCCGAGTACTATGTTTTGAATGTTTTAACAACTAAAAGTGATGTTTATGGTTTAGGTGTTGTGATGTTGGAACTTTTGACAGGTAAAAAAGCAGTGTTTAAGAATGAAGGTGCATCAGGTCCTATTGGTGTGGTGGAATATGCAGGAGGAAAAATAGGAACAGGAGAAGTGTGGAATTTGTTGGATCATAGAGTTGGAATACCAGAAGTTAATGAAGTTGAATCTGTTGAGATTATGGCTTATACTGCTATGCATTGTGTTAATTTGGAGGGTAAAGAAAGACCTAATATGGTTGATATTGTTGCTAATTTGGAAAGAGCTTTGGCTTATCTTGAGGGTAGTCCTAGTAGTTTTTCTATGTCTTCATTATAA 2478 0.3527 MTPTITLIFIFTFIFTITTVNSLGIASTTAITYNTSTICGIVAGKPHQYIQCYQNKKLIPLILPNVSFKSISGGRSFFCGLRSNGLSFYCWDTRNPKSFLEPRRLYHSENVQLSDVAVGDDQVCARELHSGVVRCWRGYGGNNGVEFPSPDQSFRFRTVTCGYGFCCGILKVSNRVFCWGENGENGVENLIQKQFENLSMSTLVSGVSHVCGLNLNGDLICKGKNNNDDDSGKLNVPSNSGSVFSHLALGENFTCAIRIKNGFIQCWGGDFGIDFDSDNVHNHVMKGVSFESIVAGLDFVCGLTTKDLSLICWGNNPNWHTKHHLKSDVYVPLGMILPGPCVKNDSCRFCGVYPNSDFLCHGFGNICNQCRIELPVAMRLPPTISSSSSSSSPNNQPSSDNNEEKRSRGWKLKMFLIIGSVGAFAGLCTILYFVMIGGRRLLKAKIDNSVQPTSSESDNAYVDIAPMQNVGTINNNGTSTLRSFSSKRHSSSRLRSGSSSKQLDRTESFSFWELVAASDNFSTENKIGSGSFGSVYKGRLIDGREVAIKRGDTCLRKKKFQEKELAFDSELTLLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLHDHLHDKDNVEKNSSIMNSWKMRIKVALEAARGIEYLHNYAVPPIIHRDIKSSNILIDSNWNARVSDFGLSLIWHETEQESMSNIQAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKKAVFKNEGASGPIGVVEYAGGKIGTGEVWNLLDHRVGIPEVNEVESVEIMAYTAMHCVNLEGKERPNMVDIVANLERALAYLEGSPSSFSMSSL 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00890 825 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Tsu03g00890 825 Gene3D - 62 330 IPR009091 -
Tsu03g00890 825 Gene3D Transferase(Phosphotransferase) domain 1 602 815 - -
Tsu03g00890 825 SUPERFAMILY Protein kinase-like (PK-like) 497 806 IPR011009 -
Tsu03g00890 825 Gene3D Phosphorylase Kinase; domain 1 493 601 - -
Tsu03g00890 825 CDD STKc_IRAK 527 808 - -
Tsu03g00890 825 MobiDBLite consensus disorder prediction 473 499 - -
Tsu03g00890 825 SUPERFAMILY RCC1/BLIP-II 59 333 IPR009091 -
Tsu03g00890 825 ProSiteProfiles Protein kinase domain profile. 521 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00890 825 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 4 818 IPR044815 GO:0004674
Tsu03g00890 825 MobiDBLite consensus disorder prediction 383 404 - -
Tsu03g00890 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Tsu03g00890 825 MobiDBLite consensus disorder prediction 383 400 - -
Tsu03g00890 825 Pfam Protein kinase domain 522 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00890 825 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 4 818 - -
Tsu03g00890 825 SMART serkin_6 521 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00890 Tsu-Chr3 8217009 8219486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00890 1 821 Receptor kinase-like Gene Family AT3G55950 48.865 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Tsu03g00890 Pkinase 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00890 - - gmx:100802403 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00890 03 8217009 8219486 Tsu03g00890 03 8217009 8219486 ECH