Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00888 atgtgCAACGGTTCGAATCTAAAGCCGTGTCAAACTGGTTTGATTAGGGAACATGAATATGGAAGACAAGAAGAACTTCATCATAAGATTTCTGCATTGCTTGAGTTTGCAGCCAAAGATGATGTAATAGCTTTCAAAGATGCTGTTGAAAAAGACGGTTGTGATGTCGATGAGGTAGGGTTATGGTATGGAAGGAGGGTTGGCTCAAAGGAAATGAGTTATGAAGAAAGGACTCCTCTTATGATTGCTGCCTTATTTGGAAGCAAGGATGTGTTGTGTTATATTCTTGAAACCGGCCGTGTTGATGTTAACCGAGTGTGTGGTTCGGATGGTGCTACTGCTCTTCATTGTGCTGTTTTTGGTTGTTCTGCTGCTTCTGCTGAGGTTATCAAGCTTTTGCTGGATGCATCTGCAGATGTTAATTCTGTTGATGCGAAAGGTAACCGGTGTATTGACTTGATTGTTTCGGTTTCTAATAGTATCTTCGGTTCAAAGAAGAGGATACTAGCCATACTAGAAGGTGAAGATGGTGTTGAATACGACGGCGGTGATTGCCTTAAGGAAGCAGGTTTCCAAATGGAGAAGCTGCAACGAGACTCAGGTTCACCTCCGATCGAGAAGAAAGATTATCCGATTGATCCATCCCTACCGGACATAAAGGATGCGATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTCAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGCTCATCCTGGGGAAAACGCAAGGCGTCGTGATCCGAGGAAATATCATTACACTTGTGTCCCTTGTCCCGAATTTCGGAAGGGATCATGCAGTAAAGACGATGGTTGTGAATATGCACATGGTATTTTTGAGAGCTGGCTTCATCCTGCTCAATATAGAACGAGGCTTTGCAAAGATGAAACTAAATGCACAAGAAGAGTTTGCTTCTTTGCTCACAAACCCGAAGAGCTTCGCCCCGTGTACGCTTCTACTGGTTCTGCTTTGCCTTCACCTACTTCATATTCAAATTCACCACCTAGTCCTTCAATGGATTCTTTCGCACTGAACTCTCCATCTGCGGCGATGTCACCTCTGACTCCATCTGCAGTGTCTTCTCCTTCATGCGGAACCATGTGGCCGACTCATTCTCATGCTCCAATCCCTACACTTCAGATGCCGAGAAGCAGATTGAATACCGCACATAATGCTAGAGATAATATTGAATTGCTCGAACTTGAAAACTGCCTTATGCAGAAGCTAATGATTGAAGAGATGACAGGTCTTTCATCCCCTTCAAATAGGTTTTCAGGAGTGAATCTTACTAACCTTGAAGACATTTTCGGGTCACCGAGACAATCTCCAACATCAATGCAGGTGCATCAGAATGTAAACCAGCAAATGTGGGGCTATCCTTCTGACATTACCAATTCAAATGTGATTGGATCACCACAATTCAGGGCTGATCCATCTATGAATTCAAGATATGATCCCTTTATGAAGCGGAGCCATAGCTTATTTGAACTCAGCAGCAATGCAAGCTTTAATTCTGAGCTTCCTTCTGCTACATCAGTTGCTGCGGCGCCTTCAAACTTCTCCGGTTGGGGCTCCCCAGATGGAAAATTAGACTGGTCCATTCGTGGCGATGAACTCAACAAAATGAGGAAATCTCATTCTTCCATCTTTCAAAACACAAATAGCTTTTCGACAATGGCTGCACCAAATGTTGATTATCCAGATGTATTGTTAAGCCAGGAAAAATGGGTTAATTCGCTGGTGAAGGATGCCCCTCCAACATTGGAATCTGATCAATATTGTGTTGAAGACAAAGATAATCTGCAATGCGATAATCAAGACGAGGTTCTCTCTTTGCCGGAACAATTGTACATGGACATTGAGCAGATGGTGATGTGA 1926 0.4304 MCNGSNLKPCQTGLIREHEYGRQEELHHKISALLEFAAKDDVIAFKDAVEKDGCDVDEVGLWYGRRVGSKEMSYEERTPLMIAALFGSKDVLCYILETGRVDVNRVCGSDGATALHCAVFGCSAASAEVIKLLLDASADVNSVDAKGNRCIDLIVSVSNSIFGSKKRILAILEGEDGVEYDGGDCLKEAGFQMEKLQRDSGSPPIEKKDYPIDPSLPDIKDAIYSTDEFRMFTFKVKPCSRAYSHDWTECPFAHPGENARRRDPRKYHYTCVPCPEFRKGSCSKDDGCEYAHGIFESWLHPAQYRTRLCKDETKCTRRVCFFAHKPEELRPVYASTGSALPSPTSYSNSPPSPSMDSFALNSPSAAMSPLTPSAVSSPSCGTMWPTHSHAPIPTLQMPRSRLNTAHNARDNIELLELENCLMQKLMIEEMTGLSSPSNRFSGVNLTNLEDIFGSPRQSPTSMQVHQNVNQQMWGYPSDITNSNVIGSPQFRADPSMNSRYDPFMKRSHSLFELSSNASFNSELPSATSVAAAPSNFSGWGSPDGKLDWSIRGDELNKMRKSHSSIFQNTNSFSTMAAPNVDYPDVLLSQEKWVNSLVKDAPPTLESDQYCVEDKDNLQCDNQDEVLSLPEQLYMDIEQMVM 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00888 641 Pfam Ankyrin repeats (3 copies) 64 144 IPR002110 GO:0005515
Tsu03g00888 641 Gene3D - 270 331 - -
Tsu03g00888 641 Gene3D - 22 114 IPR036770 -
Tsu03g00888 641 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Tsu03g00888 641 SMART ANK_2a 110 142 IPR002110 GO:0005515
Tsu03g00888 641 SMART ANK_2a 75 105 IPR002110 GO:0005515
Tsu03g00888 641 MobiDBLite consensus disorder prediction 337 360 - -
Tsu03g00888 641 MobiDBLite consensus disorder prediction 334 360 - -
Tsu03g00888 641 Gene3D - 115 173 IPR036770 -
Tsu03g00888 641 PANTHER UNKEMPT FAMILY MEMBER 19 640 IPR045234 -
Tsu03g00888 641 SUPERFAMILY Ankyrin repeat 28 157 IPR036770 -
Tsu03g00888 641 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 19 640 - -
Tsu03g00888 641 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Tsu03g00888 641 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00888 Tsu-Chr3 8194130 8196055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00888 25 563 C2H2 Transcription Factor Family AT5G12850 42.647 6.51e-136 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu03g00888 Ank_2 3.2e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00888 - - mtr:MTR_1g075890 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00888 03 8194130 8196055 Tsu03g00888 03 8194130 8196055 ECH
Tsu05g02817 05 38415718 38418660 Tsu03g00888 03 8194130 8196055 ECH