Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00879 ATGGAGGGTTTCGAGAATCCAAGCTCGCTAAACCCTAAACCTGCTTTCTCGCAACAAAAGCTTCAAATCAATGAAAGGGTTGAGGTGAGGAGTTTTGAGGATGGTTTTCTGGGATCATGGCATCCAGGGACCGTTATTCATTGCGAGAAGCTGAAACGTTATGTTAGATATGAGAATATTTTGAATGATGATGGGTTGAGTAATTTTGTGGAAGTAGTGACTGTTTCAAGTGTTTTGGATGGTAATTTCGGAACACCGAGTGGACGTGGGGTGATTAGGCCATTGCCTCCTTTGGTTGAGTTTGAGAAATGTGATCTTAAGTATGGTCTGTGTGTTGATGTAAATTATCAGGAAGCTTGGTGGGAAGGTGTTGTATATGATCACTGTGATGGAATGGAGGAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATGAAGGTCGGAATTCAGCAAATGCGGATTACTCAGGATTGGGATGAAGTTACAGAGAAGTGGGAGCAACGAGGGAAATGGTTGTTTCTTGAATTGATTGAGGAGTGTGAGCGGGAATCATATGTTCCAGTTTCGGTAAAGCAAATTTGGTATGATGTGCGACAGAAAGAGGAATTTTCTGCAATTGAGGAATGGACTTTGAATGTGAAGAAGGATTTGTGGAGAAACATGATAGCGGAGGTAGTTGGTGACTACTTGGCTATTACATTAAGTGAAGTTTTCTCAGCCTTGAACTTGCCAGAGCTTAACTTAGTTGAACTAATATCTAATGTTGATTCAAACGCGACTTTATCTGAAAAGGAGAATTTTGAGCAGAGAGAATCTGTTCTTCCTGTTGGAAAGGACTTGCCTAGGTTTCAAAATGAAGTTTCCTGCAACGGTGCTGGTGAAGAAGTTTCGGTTTCTATCGGTtttgagaaaaaggaacacACTTCGTCAACTTATTTAAACTCCAATAGATGGGAACGTGTAATATTTTCAGAAACTGAATACTGTCCTGATGCTGTTAAGCAATATGCACTTGCTTCTAACGACAGACCGACTATGGCATCTTTGAAGGAAAAAGTATTGAAACATCTTGCATATCTTGGATGGGAAATTGACTACTATAGTAAACAGTACAGATACACGCCACCCCATGGAGACCATTGCAAGAAGAAACTTTACTACTCACTTATTGAAGTTTGTAAAGTTATGCAAATGGAATTGTTGCATCCTACCGGTGACTGTCTTGTTCCAGATGTGCCTCTTAATCCATTGGAAAATATTCAGAACCGAGATGCATCTTCTCTAGTTGCAGATGAACAAGCGCCTCCTTCTGTTGCAGCGGCAGATGAACAAGCTTATTGTCCTCAAGCCATTGTGGAATACCACAAACATGCATCTGAGGCAAAATGGAAAGATAAACGTAAAGCTATTTCAAAAGTAAAAACACATCTGTTAGCAGAAGGATGGACTTTAATTAATCCACCTCCAGGTAATAGAAGAAGAGGTGTTGTGTACATTTCTCCGCAAAAGCAGAGATTTGACTCACTGATCACAGTATGTAATTTCTATGTTGAAGAAATTATTCCAAAATTGACTATTTCtggcgtgcaaccttcaaatagaTCATCACATTTGCTTCCTCAGGAGCCTGAATTACACACTATAGACACTGCTGCTGTGAATAAATCAAGTGCAAATCGAAAGCGAAAGCGAAAGCGCTTTAGGAATTTGGATGACAGCCTGCCGAAGTGCCAAAGCAATGAATCAACTCTAAGAGTGCTGAGATCAAATAAAAGGGTGCGAGAGCAATCTGAATCAACCCTAAGAGTGCTGAGATCAAATAAAAGGGTGCGAGAGCAATCTTCCTCTTGTATGTCAAACCAGAAACCTCTAAATGTTCTGTCTTGGTTGATAGACAGCAACGCGGTGTTACCAAGGTCTAAGGTTTACTGTCGAGCAAAACGTGGGCAACCTGTTCTGCCTGCGGGGAGAATAACTCATGAAGGAATCAAGTGTAACTGTTGTTTGAGAATATACAGTCTTGTTTCCTTCCAATTTCATGTTACCGGCAtgaataccaccagaccaagtGCTAGGATCTTTCTTGACGATGGTAGGTCGCTCTTATCTTGCCAGATGCAAATAATGCAAGATCACAAGTCAAAGGAGGCTATGGGAAAACCACTCAGTGTTTTGCGTCAGGGTGAAAACGACTACATTTGTTCCGTTTGCCACTACGGGGGCGAACTTCTTTTGTGCGACAAATGTCCGTCTTCATACCATAACACATGTCTTGGTCTGGAGGATGTTCCTGATGGTGATTGGTTTTGTCCATCTTGTCATTGCGGGATTTGTGGACAAAGCAAATTCAATGTGGGCGGTGAGGATGGAGATTTCTTTACATGCATTCAGTGTGAACATAAATATCATGTTGCATGCCTGAAAAGTAGAGATAAAAGTAAATCTGGAAGTTATGTGGAAAGCCGGTTCTGCGGAAAAGACTGCGAAAAGTTATACGCAGGCCTTCAAAGTCTGTTGGGAAAGCCATTTCCAGTGGGCGTGGATGGTCTAACATGGACATTGGTAAAGTGTATAGACTCTGAGAGTTGTGATCTTGATAGTAGTAAAATTGGATTATGGGCAGAATGTTACAGCAAACTCAATGTTGCTCTTTCGGTGATGCATGAATGTTTTGAGCCCCTAAAGGAATCCGCATCTTGCAGAGATCTGGTGGAAGATGTTATATTCAGCAGATCGTCCGAACTTAATCGAATGAATTTCCAGGGTTTCTATACTGTAGTTCTGGAGAAAAATGAAGACATGGTCAGTGTGGCAACTATTAGGGTCCTTGGAGATAAGGTAGCTGAAGTACCTCTTGTTGGTACCAGATTTCATTATCGTCGACATGGAATGTGTCGCATATTAATGGATGAACTGGAAAAGAAACTCATGCAATTAGGAGTGGAGCGGCTCGTTTTGCCTGCTGTTCCAAGTGTGGCAGATACATGGACAAGTTGTTTTGGCTTTTCTAAGATGACAAACTTAGAAAGATCGAAATTTCTGGATTATACTTTCTTAGATTTTCCTGGCACCATCATGTGCCAGAAGCTTTTGATGAAGATTCCGTCTCCAGATACAGTTTTGCCAATAGCGTTCCAACAAAAACATGATGCTATCTCCGGAAGCAGTACCGCTAATAAGTCTCCGGTATCTGAAGTTGACCAAGCCGGAGagataaacaaaaaagaaatgcaGGACCAACAAATGTTGGATACTTCTGAAGGCAATAATGATAATCTTGGCAGTGCTGTTATTGACTCTGTTGCCATGGGGGAGCAACCAAGTCCTGAGGATCAACATTGCCAGGATGGAACCTCCACTTCACAGGGTACTTTTGAAAGATGGAATGGCTTGTGTTACTCTAGAAGAAGGAAGGTGAAAGATCATGAGTAG 3435 0.4064 MEGFENPSSLNPKPAFSQQKLQINERVEVRSFEDGFLGSWHPGTVIHCEKLKRYVRYENILNDDGLSNFVEVVTVSSVLDGNFGTPSGRGVIRPLPPLVEFEKCDLKYGLCVDVNYQEAWWEGVVYDHCDGMEERSVFFPDLGDEMKVGIQQMRITQDWDEVTEKWEQRGKWLFLELIEECERESYVPVSVKQIWYDVRQKEEFSAIEEWTLNVKKDLWRNMIAEVVGDYLAITLSEVFSALNLPELNLVELISNVDSNATLSEKENFEQRESVLPVGKDLPRFQNEVSCNGAGEEVSVSIGFEKKEHTSSTYLNSNRWERVIFSETEYCPDAVKQYALASNDRPTMASLKEKVLKHLAYLGWEIDYYSKQYRYTPPHGDHCKKKLYYSLIEVCKVMQMELLHPTGDCLVPDVPLNPLENIQNRDASSLVADEQAPPSVAAADEQAYCPQAIVEYHKHASEAKWKDKRKAISKVKTHLLAEGWTLINPPPGNRRRGVVYISPQKQRFDSLITVCNFYVEEIIPKLTISGVQPSNRSSHLLPQEPELHTIDTAAVNKSSANRKRKRKRFRNLDDSLPKCQSNESTLRVLRSNKRVREQSESTLRVLRSNKRVREQSSSCMSNQKPLNVLSWLIDSNAVLPRSKVYCRAKRGQPVLPAGRITHEGIKCNCCLRIYSLVSFQFHVTGMNTTRPSARIFLDDGRSLLSCQMQIMQDHKSKEAMGKPLSVLRQGENDYICSVCHYGGELLLCDKCPSSYHNTCLGLEDVPDGDWFCPSCHCGICGQSKFNVGGEDGDFFTCIQCEHKYHVACLKSRDKSKSGSYVESRFCGKDCEKLYAGLQSLLGKPFPVGVDGLTWTLVKCIDSESCDLDSSKIGLWAECYSKLNVALSVMHECFEPLKESASCRDLVEDVIFSRSSELNRMNFQGFYTVVLEKNEDMVSVATIRVLGDKVAEVPLVGTRFHYRRHGMCRILMDELEKKLMQLGVERLVLPAVPSVADTWTSCFGFSKMTNLERSKFLDYTFLDFPGTIMCQKLLMKIPSPDTVLPIAFQQKHDAISGSSTANKSPVSEVDQAGEINKKEMQDQQMLDTSEGNNDNLGSAVIDSVAMGEQPSPEDQHCQDGTSTSQGTFERWNGLCYSRRRKVKDHE 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00879 1144 SMART agenet_At_2 104 161 IPR014002 -
Tsu03g00879 1144 MobiDBLite consensus disorder prediction 1102 1128 - -
Tsu03g00879 1144 Pfam Agenet domain 25 97 IPR008395 -
Tsu03g00879 1144 CDD NAT_SF 927 987 - -
Tsu03g00879 1144 SMART PHD_3 734 775 IPR001965 -
Tsu03g00879 1144 SMART PHD_3 776 830 IPR001965 -
Tsu03g00879 1144 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 17 1086 - -
Tsu03g00879 1144 PANTHER PHD ZINC FINGER PROTEIN 17 1086 - -
Tsu03g00879 1144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 786 IPR013083 -
Tsu03g00879 1144 SUPERFAMILY FYVE/PHD zinc finger 715 774 IPR011011 -
Tsu03g00879 1144 SMART ring_2 735 774 IPR001841 -
Tsu03g00879 1144 SMART ring_2 776 828 IPR001841 -
Tsu03g00879 1144 Gene3D - 882 1037 - -
Tsu03g00879 1144 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 887 1038 IPR000182 GO:0016407
Tsu03g00879 1144 Pfam Tify domain binding domain 657 708 IPR032308 -
Tsu03g00879 1144 MobiDBLite consensus disorder prediction 1112 1128 - -
Tsu03g00879 1144 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 914 992 IPR016181 -
Tsu03g00879 1144 MobiDBLite consensus disorder prediction 555 577 - -
Tsu03g00879 1144 MobiDBLite consensus disorder prediction 1053 1072 - -
Tsu03g00879 1144 MobiDBLite consensus disorder prediction 1053 1067 - -
Tsu03g00879 1144 CDD PHD2_CHD_II 735 774 - -
Tsu03g00879 1144 Pfam PHD-finger 734 776 IPR019787 -
Tsu03g00879 1144 ProSiteProfiles Zinc finger PHD-type profile. 732 777 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00879 Tsu-Chr3 8083867 8090415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00879 30 975 PHD Transcription Factor Family AT5G58610 37.475 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu03g00879 Agenet 4.6e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00879 - - cam:101498411 1553.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00879 03 8083867 8090415 Tsu03g00879 03 8083867 8090415 ECH
Tsu03g00879 03 8083867 8090415 Tsu05g02852 05 38699930 38707131 PCT