Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00871 ATGCTTGCTGCTATCATTTCATTGTTACTTGTAATTctctttgttcttcttcttcatctttatGCTAAATGGTTCTTATCACAAGCACATGCTCAAGCACAAGCTCGTAGACGCCGTCGTCGAAGAACAACTGTTACTGTCTCTGATGTTCTTGGTCCTGCAAGGTTTCATCATTTCCATAGCTTCAATATTGAAGACTCACCACTTTCTAGCTCAAATACTAAAGGACTTGATTCTTCTATCATTGCTTCAATTCCTTTGTTTATTTATGCAGATAAGATTcaaaagaatgaaattgaaCAAGAACTTGAATGTGTTATTTGTTTGAGTGGTTTTGAAAATGGTGAAATGGGAAGGTGTTTACCAAAATGTGGACATGGTTTTCATGTGGAATGTATTGATATGTGGTTGAATTCACATTCTAATTGTCCTATTTGTAGAGCTTCAATTGTTGTTTTTGAGAATGATTCTTCAAGTAATGTTGTTGATGGTTCTTCTAGTTTTGTTGAAATTGTGATTGATGAAAATTCTAGTTCTGAGATTAGAGAGGGGGAAGAACAAGTGAATGAAAATGATAATGGAAGAGTACAACTACAGAGTGATTCTGTTTCAGAAAATTCATCTTTGTTTGGTTGTTCTTTGAAGACAGTTTTCAGCAAAGTTTTTCCATCTTCCAATGTTAATGAATCACAATCTTGA 699 0.3233 MLAAIISLLLVILFVLLLHLYAKWFLSQAHAQAQARRRRRRRTTVTVSDVLGPARFHHFHSFNIEDSPLSSSNTKGLDSSIIASIPLFIYADKIQKNEIEQELECVICLSGFENGEMGRCLPKCGHGFHVECIDMWLNSHSNCPICRASIVVFENDSSSNVVDGSSSFVEIVIDENSSSEIREGEEQVNENDNGRVQLQSDSVSENSSLFGCSLKTVFSKVFPSSNVNESQS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00871 232 Pfam Ring finger domain 104 147 IPR001841 -
Tsu03g00871 232 SMART ring_2 105 146 IPR001841 -
Tsu03g00871 232 SUPERFAMILY RING/U-box 91 153 - -
Tsu03g00871 232 CDD RING-H2_EL5_like 104 147 - -
Tsu03g00871 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 152 IPR013083 -
Tsu03g00871 232 PANTHER RING FINGER DOMAIN-CONTAINING 1 231 - -
Tsu03g00871 232 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Tsu03g00871 232 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00871 Tsu-Chr3 7974731 7975429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00871 1 195 Rapid Response to Elicitors AT3G16720 36.893 2.57e-34 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00871 - - lang:109329145 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00871 03 7974731 7975429 Tsu03g00871 03 7974731 7975429 ECH
Tsu03g00871 03 7974731 7975429 Tsu05g02872 05 39017740 39018423 PCT