Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00854 ATGAAAGAAGCATGGAGATTCATTACGTTCATAGTAATTATTGGGTTGATGATGTCTTTCCAAATGAATTCATGTGATGGGTTGGTACTTGAAAATATGAGGGAGAGGATGGTGAGAGATCCATTGGGGAGTTTATTGAAGTGGAATGGTAAAGAAGAAGTCATTGATACATGCTTTTGGTTTGGTGTGGAATGCTCTCAAGTAAATGTTGTGACCTTGCACATTGGCCAACAAGAGGATATACCATATAGCAGGAAACTTATACAAACAGAAAATTCTGCTAACTCACACAAAACCAAGAaagttgatgaaaaaaagactccttcaccatcatcatcaccattttCTATACATGTTTCACCATCACAAAGTTTCTCAAATTCACCATCACCATCAATTTTCCTTCAATCATCGATAACATCACGGGAACTTTCCCCTTCGCCATCACTGTCTCCCTCGCCTTCACCTGTGATAGCACCGCCAACAACTTCACACTTACCACTTACATCAAACCCACCTACAATTGTTTCCACACAAGAACATTCTAATTGGATTTCAGCACCTTCTCCTGCTTCATCttcaaacaaaaagaaacattCTGTTATTATATGGTCAACAGTTGGAGGGTTTTCCTTCATGGTTTTGGTGTCATTCGCTGTTTTCATTTGCTTCAGAAGTAGTAAGGTTGCTACTGTAAAACCTTGGGCCACAGGGTTGAGTGGCCAGCTTCGAAAAGCATTTGTAACAGGTATTCCAAGTCTTAAACGAGCCGATCTAGTAGTAGCTTGTGAAGATTTCAGCAACATCATTGGTTCTCTACAAGACGAGACTATCTATAAGGGAACTCTTTCAAGTGGAGTTGAGATAGCTGTAGTATCCTCTTCCATGACTTCATCTCAAGGCTGGTCTAAAAATATGCAAACTCAGTTCCGAAAGAAGATTGAGATGTTATCAAGGGTGAACCACAAGAACTTTGTGAATCTTATTGGTTACTGTGAGGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGGACACTGTTTGAGTATTTACATATTAGAGAAGCGGAGCAACTAGACTGGAGAACAAGAATGAGGATAGCTATGGGAATAGCATACTGTCTAGACCACATGCATCATCTAACACCACCTATTGCACACAGAAATCTTCTATCTTCGTCTATATACCTCACCGAAGATTATGCTGCTAAAATATCGGACCTTAGTTTCTGCACCGACAAAGTTGATACAAAGAAGGTTTCCGAGAAAACCTCAGCAGAAGCAATAAATGACAATGTGTATAGTTTCGGTGTAATATTGTTTGAAATGATAACAGGAAAAATTCCCTATGCAGTGGAAAATGGTTTTCATTCAGATTGGGCTGCAGAATATATAAAAGGACAACCATTGAGAGAGTTGGTGGATACAAGCTTATTGAACTCTTTGAAAGATTATGAAATAGAGAAATGGTCAAAAGTGATTAATAGTTGTGTAGATTCTGATCAAGAAAAAAGGCCATCAATGAAAGAGATTACATCTAAGTTAAAGGAAATTACTGATATGGGACCTGATGGTGCaactccaaaatcatcacctCTTTGGTGGGCTGAAATTGAAATTATGTCGACAGATTTATGTTGA 1656 0.369 MKEAWRFITFIVIIGLMMSFQMNSCDGLVLENMRERMVRDPLGSLLKWNGKEEVIDTCFWFGVECSQVNVVTLHIGQQEDIPYSRKLIQTENSANSHKTKKVDEKKTPSPSSSPFSIHVSPSQSFSNSPSPSIFLQSSITSRELSPSPSLSPSPSPVIAPPTTSHLPLTSNPPTIVSTQEHSNWISAPSPASSSNKKKHSVIIWSTVGGFSFMVLVSFAVFICFRSSKVATVKPWATGLSGQLRKAFVTGIPSLKRADLVVACEDFSNIIGSLQDETIYKGTLSSGVEIAVVSSSMTSSQGWSKNMQTQFRKKIEMLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEYLHIREAEQLDWRTRMRIAMGIAYCLDHMHHLTPPIAHRNLLSSSIYLTEDYAAKISDLSFCTDKVDTKKVSEKTSAEAINDNVYSFGVILFEMITGKIPYAVENGFHSDWAAEYIKGQPLRELVDTSLLNSLKDYEIEKWSKVINSCVDSDQEKRPSMKEITSKLKEITDMGPDGATPKSSPLWWAEIEIMSTDLC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00854 551 Pfam Protein tyrosine and serine/threonine kinase 270 520 IPR001245 GO:0004672|GO:0006468
Tsu03g00854 551 Gene3D Transferase(Phosphotransferase) domain 1 347 529 - -
Tsu03g00854 551 PANTHER PROTEIN MALE DISCOVERER 2 7 75 - -
Tsu03g00854 551 Gene3D Phosphorylase Kinase; domain 1 242 346 - -
Tsu03g00854 551 MobiDBLite consensus disorder prediction 89 195 - -
Tsu03g00854 551 ProSiteProfiles Protein kinase domain profile. 264 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00854 551 MobiDBLite consensus disorder prediction 162 195 - -
Tsu03g00854 551 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 7 75 - -
Tsu03g00854 551 PANTHER PROTEIN MALE DISCOVERER 2 98 549 - -
Tsu03g00854 551 SUPERFAMILY Protein kinase-like (PK-like) 251 520 IPR011009 -
Tsu03g00854 551 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 98 549 - -
Tsu03g00854 551 MobiDBLite consensus disorder prediction 108 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00854 Tsu-Chr3 7813779 7818141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00854 184 523 Receptor kinase-like Gene Family AT1G79620 28.900 5.51e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Tsu03g00854 PK_Tyr_Ser-Thr 5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00854 - - var:108343001 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00854 03 7813779 7818141 Tsu03g00854 03 7813779 7818141 ECH