Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00850 ATGGCTTCAGCATTGGAATGTTGGTCAAGACGaggcaacaacaacaacagtaacaaCAACGATGAAGAAGACATGGTTGAACAAGTTCTAATGGAAACAAACCCATCTTCACAACCCAACAACAAAGACTCTTCAATCATTCACAAGAAGTTTAACAAACTCACTCGCAATGTTTCTGAAGCTATTGCTTCACTCAAAAACACTCTCAACATTAACCTTAATCTTGATTCTTCCAAACccgacaacaacaacaatactTGTCGAAGTAGTAACAATAACCTCGTTTGGGGAACTGTTGTGAGAAATCTTACTCAACTTTATCCTGGTAGTCAACTTCCTGAGAAGCTCATGTCCAATATTCGCAAGCACTATGATTCTTTGCCTCCTAGTTATTCTCAGGCCGGTTTTGATGTTAAAGATGTGTTTCTTCACATCAAGCTGATTGAGCAAACTTTGGAAGATTCGCAGGCTGCAATTTTGATTGAAGAAGAGTGTGACGGTGAAATGCAGCTTCAAGGGTCTTTGTTCAAGTTGACATTTGCTTGTAACTCTCCAATTTCGTGGCCTGCAATGTCCAGTGCGTTGGATAGTTCCTCCATTTGTTGCAAGAAGATTCAGATCTTTGAGAAGAAAGGTCTCACCCTTGGAATTGTACTTCTACTTGTTCTCTCTGGGGCTGGACAAGATAAGTTGGTCAGGACCCGAGTTGAAAGTGCTCTCAAGTTTGCCATGAAGAAGCCTAAAGCCAGTGTTGTGAAGCTTCCCTTTGGGCTTTGTGGATGTCAAGAGGAGAATTTCAAGGGGAGAGAATTTGGAGAGATTGAAGAGAATTGTAGCGGTGTATACTGCGGAAATGGATTTGAGAATTTGAGCCAAAAGATTCAGCTCGAAATGCCATTGCCTAATACATTGTTTCATGTATCGGTAGATGAGTGGCAGACTATTCTGACAGATGCCGATGAGATGCAAAAATGGTTGTTAAACTCAGATAGTCTTGAGTTCTCGGACCAGATTGGACACAATTCGTATAAAGGATCCTACATGGGGAAAAAAGTTGGCATTGAGAAGCTCAGAGGGTGCGACAAAGGTAACTCATATGAGTTTGTGCTCAGGAAAGATCTGCTAGAACTGATGACGTGTGGACATAAAAATATTCTGCAGTTTTGTGGTGTTTGTGTAGATGACAATCACGGGTTATGCGTAGTGACGAAATTCATGGAAGGTGGATCTGTTCATGACTTGATTTCAAAGAACAAGAAACTTCAGAGCAAGGATATTGTAAGAATTGCAGTCGATGTGGCTGAGGGGATCAAGTTTATGAATGATCACGGTGTTGCATATAGAGACCTTAATACTCAGAGGATTATGTTGGATAAACACGGGAGTGCTTGCTTGGGAGATTTGGGTATAGTCACTGCCTGCAAGAGCAACCAAGAAGCAATGGACTATGAAACTGATGGTTACCGGTGGCTAGCTCCAGAGATAATCGCCGGTGACCCTGAGAGTGTCACCGAGACATGGATGAGCAATGTTTATAGTTTCGGCATGGTAATTTGGGAGATGGTATCCGGTGAAGCAGCCTATTCAACATATTCACCTGTCCAGGCAGCAGTAGGCATTGCGGCTTGTGGCCTTAGACCTGAGATCCCAAAGGACTGCCCACAAATTCTAAAATCTCTAATGACAAAATGCTGGAACAACACGCCTTCAAAACGCCCCGAATTCTCCGAAATATTAGCGATATTGCTAcgacacaacaacaacaacaacaataaATGTGAAGTTGTCAAGGTCATTGTCTCACTTTTTCCTGATATATCTacctttttcatattttatggAAGAAATCAAGAGAAACACTATCACAAAAACCCAAAACCAAGAAGAAGAACCATAACCGTTTTCTGTTTCTCTCCGATTCTCACCGATTCCATTCTTCTTTTCCTCACTTCATCTCAGAAGTTCCGATCGTTGATCTTTATGCTTCCTAGAAAGCGACAGTGTGAAGGAGTGGTTGTGGAAGAAGAGACGGGGAATAGTAGTTTACCGAACAAGAAGAATCTGATTGTGGCATTTGGAGCTGCCGATTCGGCCGTTAACAGCGACCGGAGTTTGAGTGGcagtaataataacaataatagtaGCGGGAAAGAGGTTGATCGAGGAACTTACAACACTATGGCTCTGGGAGATAACAACCAGCAAGAGATCGATGAAGATTTGCATAGCCGGCAGCTGGCTGTGTATGGTAGAGAGACTATGCGGAGGCTTTTCGGAGCTAATGTTCTTGTGTCTGGGATGCAAGGTCTTGGCGTTGAGATTGCGAAGAATCTCATTCTTGCTGGTGTCAAATCTGTGACCTTGCATGATGTGGGGACTGTTGAGCTATGGGATATGTCTAGCAATTTTGTGTTTGCTGAGAATGATGTTGGCAAAAACAGAGCATTGGCTTCTGTTTCTAAGTTGCAGGAGCTGAACCATGCAGTGGTTGTGCAAAGCTTAACATCCGAGCTGACAAAAGAGCAACTTGCTGATTTCCAAGCTGTTGTTTTTACTGATGTTAGTCTTGAGAAAGCCATTGAGTTCAATGATTACTGTCACAACCATCAACCTCCTATTGCTTTTATTAAAACAGAAGTTAGAGGCCTTTTTGGTTCCGTGTTCTGTGATTTTGGGCCTGAGTTTACTGTTTTTGATGTTGATGGAGAGGAAGCCCATACTGGCATAATTGCATCTGTCAGCAACGACAATCCTGCTCTAGTATCATGTGTTGATGATGAGAGGCTTGAGTTTCAGGATGGAGATCTTGTTGTATTCTCTGAAGTTCATGGCATGAAGGAATTAAATGATGGAAAGCCAAGGAAGATTAAAAATGCTAGAGCTTATTCATTTACCCTTGAAGAAGACACAACAAATTATGGCACCTATGAAAAAGGTGGTATTGTCACACAAGTCAAGCAACAAAAGGTATTGAATTTTAAGCCACTGAGGGAGGCACTTAGTGATCCGGGTGATTTTCTTCTGAGTGATTTTGCCAAGTTTGATCGCCCACCTCTCCTTCACTTAGCATTCCAGGCTTTGGATAAATTCATCTCTGAGTTAGGCCGCTTCCCTGTTCCTGGAGTAGAGGATGATGCACAAAAGCTTATAGCCATTGCCAGTAGTATGAACGACAGCTCAGGTGATGATAAACTAGACGATATAAATCCAAAACTTTTGCGCCAATTTGCCTTTGGTTCTAGGGCTGTACTGAATCCTATGGCTGCCATGTTTGGTGGAATTGTTGGGCAAGAGGTTGTCAAAGCATGTTCTGGGAAATTTCATCCACTTTTTCAAtttttctattttgattcgGTGGAATCACTTCCTTCAGAACCGCTGGACCCAGATGATTTCAGACCAGTAAATAGTCGTTATGATGCACAAATTTCTGTTTTTGGATGGAAGTTACAAAAGAAGTTAGAGGATTCTCGAGTGTTTGTTGTTGGATCCGGTGCCTTGGGatgtgaatttttaaaaaacctTGCACTAATGGGAGTTGCTTGTGGAAAACAGGGGAAGCTGACGATTACTGATGATGATGTGATAGAGAAAAGCAATCTAAGCAGACAGTTCCTCTTCCGTGATTGGAATATTGGACAGGCCAAGTCCACTGTTGCTGCTTCAGCTGCTGCATCTATAAATCCTAGTTTTAATATTGAAGCTCTACAAAACCGTGTCAGTCCTGAAACCGAAAATGTGTTCCATGATACCTTCTGGGAAAACTTGAGTGTTGTGATAAATGCGCTGGACAATGTGAATGCAAGACTGTATGTTGATCAGAGATGCCTGTATTTCCAAAAGTCTCTTCTTGAATCTGGGACTCTTGGAGCGAAATGCAATACCCAGATGGTCATTCCCCACCTCACAGAAAATTATGGTGCATCTAGAGATCCTCCTGAGAAACAGGCACCGATGTGCACTGTGCACTCATTTCCACACAACATTGATCATTGCTTGACATGGGCCCGATCAGAGTTTGATGGTTTGCTTGAGAAAACTCCAGCTGAAGTGAATATGTATTTGTCCAACCCAAGTGAATATACTAATGCAATGAGGAACGCTGGAGATGCTCAAGCAAGGGATAATTTGGAGCGTGTTCTTGATTGTCTGGACAGGGATAAGTGTGACACTTTTGAAGATTGCATTACTTGGGCTCGACTGAAGTTTGAAGATTATTTTGCTAATCGGGTGAAGCAGTTGACCTTTACTTTTCCTGAAGATGCTGCAACTAGTACTGGAGCTCCTTTCTGGTCTGCACCAAAAAGGTTTCCTCGCCCATTGCAGTTTTCGACCTCTGATTTGAGTCATCTAAATTTTGTGATGTCAGCTGCTATTTTACGCTCAGAATCTTTTGGTATCCCAATTCCTGACTGGGTTAAGAACCCTAGGAAGGTGGCTGATGCAGTTGATAGGGTGATTGTACCTGACTTTCAGCCTAAGGAAGGTGTGAAAGTAGTGACAGACGAGAAGGCCACTAGTCTCTCCACTGCATCTGTAGACGATGCAGATGTTATTAATGATCTAATAATCAAGTTAGAGAGGTGCCGGACAAATTTGACCCCTTCATTCAGGATGAAACCAATTCAGTTTGAGAAGGATGATGATACAAACTACCATATGGATGTGATTGCTGGGCTTGCAAACATGAGAGCTCGGAATTACAGCATTCCTGAGGTTGACAAGCTTAAAGCCAAGTTTATTGCCGGGCGGATTATTCCTGCAATTGCAACCTCAACTGCCATGGCCACTGGTCTTGTCTGTTTGGAGCTGTACAAAGTTTTGGATGGAGGCCACAAAGTCGAAGACTATAGAAACACATTCGCAAACTTAGCATTGCCTCTTTTTTCAATGGCAGAGCCAGTCCCACCGAAGGTTATCAAACATCAAGAGACAAGCTGGACAGTTTGGGACAGATGGACTCTGGGAAACAATCCCACCCTTAGTGAACTTATTCAGTGGCTGAAGGATAAAGGCTTGAAAGCTTACAGTATTTCATGCGGAAATTGTCTGCTCTTCAATAGCATGTTCCCTAGGCATAAAGACCGAATGGACAGAACAATAGTAGATCTGGGAAGGGAGATAGCTAAGTTGGAGATTCCTTTGTATCGTCGTCATTTGGACGTGGTTGTTGCATGTGAGGATGAGGAAGATAATGATGTTGATATCCCTCTAGTATCCATTTATTTCCGTTAG 5235 0.4162 MASALECWSRRGNNNNSNNNDEEDMVEQVLMETNPSSQPNNKDSSIIHKKFNKLTRNVSEAIASLKNTLNINLNLDSSKPDNNNNTCRSSNNNLVWGTVVRNLTQLYPGSQLPEKLMSNIRKHYDSLPPSYSQAGFDVKDVFLHIKLIEQTLEDSQAAILIEEECDGEMQLQGSLFKLTFACNSPISWPAMSSALDSSSICCKKIQIFEKKGLTLGIVLLLVLSGAGQDKLVRTRVESALKFAMKKPKASVVKLPFGLCGCQEENFKGREFGEIEENCSGVYCGNGFENLSQKIQLEMPLPNTLFHVSVDEWQTILTDADEMQKWLLNSDSLEFSDQIGHNSYKGSYMGKKVGIEKLRGCDKGNSYEFVLRKDLLELMTCGHKNILQFCGVCVDDNHGLCVVTKFMEGGSVHDLISKNKKLQSKDIVRIAVDVAEGIKFMNDHGVAYRDLNTQRIMLDKHGSACLGDLGIVTACKSNQEAMDYETDGYRWLAPEIIAGDPESVTETWMSNVYSFGMVIWEMVSGEAAYSTYSPVQAAVGIAACGLRPEIPKDCPQILKSLMTKCWNNTPSKRPEFSEILAILLRHNNNNNNKCEVVKVIVSLFPDISTFFIFYGRNQEKHYHKNPKPRRRTITVFCFSPILTDSILLFLTSSQKFRSLIFMLPRKRQCEGVVVEEETGNSSLPNKKNLIVAFGAADSAVNSDRSLSGSNNNNNSSGKEVDRGTYNTMALGDNNQQEIDEDLHSRQLAVYGRETMRRLFGANVLVSGMQGLGVEIAKNLILAGVKSVTLHDVGTVELWDMSSNFVFAENDVGKNRALASVSKLQELNHAVVVQSLTSELTKEQLADFQAVVFTDVSLEKAIEFNDYCHNHQPPIAFIKTEVRGLFGSVFCDFGPEFTVFDVDGEEAHTGIIASVSNDNPALVSCVDDERLEFQDGDLVVFSEVHGMKELNDGKPRKIKNARAYSFTLEEDTTNYGTYEKGGIVTQVKQQKVLNFKPLREALSDPGDFLLSDFAKFDRPPLLHLAFQALDKFISELGRFPVPGVEDDAQKLIAIASSMNDSSGDDKLDDINPKLLRQFAFGSRAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFFYFDSVESLPSEPLDPDDFRPVNSRYDAQISVFGWKLQKKLEDSRVFVVGSGALGCEFLKNLALMGVACGKQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAASINPSFNIEALQNRVSPETENVFHDTFWENLSVVINALDNVNARLYVDQRCLYFQKSLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFDGLLEKTPAEVNMYLSNPSEYTNAMRNAGDAQARDNLERVLDCLDRDKCDTFEDCITWARLKFEDYFANRVKQLTFTFPEDAATSTGAPFWSAPKRFPRPLQFSTSDLSHLNFVMSAAILRSESFGIPIPDWVKNPRKVADAVDRVIVPDFQPKEGVKVVTDEKATSLSTASVDDADVINDLIIKLERCRTNLTPSFRMKPIQFEKDDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKVEDYRNTFANLALPLFSMAEPVPPKVIKHQETSWTVWDRWTLGNNPTLSELIQWLKDKGLKAYSISCGNCLLFNSMFPRHKDRMDRTIVDLGREIAKLEIPLYRRHLDVVVACEDEEDNDVDIPLVSIYFR 1744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00850 1744 SMART UBA_e1_C_a_2 1617 1739 IPR018965 -
Tsu03g00850 1744 MobiDBLite consensus disorder prediction 700 723 - -
Tsu03g00850 1744 ProSitePatterns Ubiquitin-activating enzyme signature 1. 1101 1109 IPR018074 -
Tsu03g00850 1744 MobiDBLite consensus disorder prediction 1 22 - -
Tsu03g00850 1744 Pfam Ubiquitin-activating enzyme, SCCH domain 1326 1579 IPR019572 -
Tsu03g00850 1744 Pfam Ubiquitin-activating enzyme E1 four-helix bundle 988 1057 IPR032420 -
Tsu03g00850 1744 Pfam Protein tyrosine and serine/threonine kinase 372 581 IPR001245 GO:0004672|GO:0006468
Tsu03g00850 1744 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 722 1743 IPR045886 -
Tsu03g00850 1744 ProSiteProfiles Protein kinase domain profile. 332 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g00850 1744 Gene3D - 1159 1637 - -
Tsu03g00850 1744 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 736 1123 IPR035985 GO:0008641
Tsu03g00850 1744 Pfam Ubiquitin-activating enzyme E1 FCCH domain 916 986 IPR032418 -
Tsu03g00850 1744 Gene3D - 1652 1742 IPR038252 -
Tsu03g00850 1744 CDD Ube1_repeat1 741 1126 - -
Tsu03g00850 1744 Gene3D - 860 1149 - -
Tsu03g00850 1744 MobiDBLite consensus disorder prediction 8 22 - -
Tsu03g00850 1744 Gene3D - 732 850 IPR042449 -
Tsu03g00850 1744 SUPERFAMILY Protein kinase-like (PK-like) 320 587 IPR011009 -
Tsu03g00850 1744 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 1134 1634 IPR035985 GO:0008641
Tsu03g00850 1744 PRINTS Ubiquitin-activating enzyme E1 signature 1233 1258 IPR000011 GO:0008641|GO:0036211
Tsu03g00850 1744 PRINTS Ubiquitin-activating enzyme E1 signature 1186 1209 IPR000011 GO:0008641|GO:0036211
Tsu03g00850 1744 PRINTS Ubiquitin-activating enzyme E1 signature 1387 1414 IPR000011 GO:0008641|GO:0036211
Tsu03g00850 1744 PRINTS Ubiquitin-activating enzyme E1 signature 763 787 IPR000011 GO:0008641|GO:0036211
Tsu03g00850 1744 PRINTS Ubiquitin-activating enzyme E1 signature 878 905 IPR000011 GO:0008641|GO:0036211
Tsu03g00850 1744 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 722 1743 - -
Tsu03g00850 1744 ProSitePatterns Ubiquitin-activating enzyme active site. 1318 1326 IPR033127 -
Tsu03g00850 1744 Pfam Ubiquitin fold domain 1650 1739 IPR018965 -
Tsu03g00850 1744 Gene3D - 904 985 IPR042302 -
Tsu03g00850 1744 Pfam ThiF family 742 1121 IPR000594 -
Tsu03g00850 1744 Pfam ThiF family 1139 1634 IPR000594 -
Tsu03g00850 1744 Gene3D - 1311 1586 IPR042063 -
Tsu03g00850 1744 Gene3D Transferase(Phosphotransferase) domain 1 326 588 - -
Tsu03g00850 1744 TIGRFAM Ube1: ubiquitin-activating enzyme E1 736 1744 IPR018075 -
Tsu03g00850 1744 CDD Ube1_repeat2 1158 1697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00850 Tsu-Chr3 7761139 7772911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00850 727 1744 EF-hand Containing Proteins AT2G30110 81.238 0.0 1758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Tsu03g00850 ThiF 3.4e-73 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00850 K03178 - gmx:100780392 1889.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00850 03 7761139 7772911 Tsu03g00850 03 7761139 7772911 ECH
Tsu03g00850 03 7761139 7772911 Tsu05g02880 05 39186365 39193990 PCT