Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00847 ATGCCAAGAAGAGCTGCTCAACCTAAGATGGGTGATCGTGTAGAGGCTTTGGAGACTCGAATGGGTTCCGTTGATACCACGCTGGAGGAACTCGTTCATCAGATGCATCAACATACTACTCAGATGCAGCAACAGAGTGCTGCTCTAGCTCGACTCAGCCAACAGATCAGCCAGAGAGGAGGGAGTTTCGAAGGAGAAACGTCAATGGATAATTCATCACATGGAGAGTCTCGCCTTGCTGGGAAGAAGGTGAAACTTCCATTATTTGATGGAGACGATCCAGTGGCGTGGATCACAAGAGCTGAGATCTATTTTGATGTGCAAAATACAGAGGAAGCAATGCGTGTGAAGTTAGCATGTTTGAGCATGGAAGGTTCAACCATCCATTGGTTTAATCTTTTGATGGAAACCGAAGATGATCTGACATGGGTTAAGTTGAAACGAGCGTTAATTGCTCGTTATGGAGGTCGAAGGCTGGAGAATCCATTCGAAGAGTTATCGGCGTTGAGCCAGAAAGGAAGTGTGGAGGATTTTGTCGAATCCTTCGAGTTATTGTCATCACAGATAGGGAGGCTTCCTGAAGAACAATATTTGGGTTATTTTATGAGCGGGTTGAAACCCCAGATTCGAAGGCGTGTGCGTACCTTAAATCCCAGAAATCGGATGGAGATGATGAGAATCGCGAAAGACGTGGAGGAAGAATTGAAGGATGAGGACGATGATGGAGATCGTAGAACTAGTAAGAAAGGAGGGTATGAGAAAATGGGTCAAAAGGATTGGGCCGGGTTCACTAGAAACAGAAATGGGTATCAGAAATCCGGTACGACGAAGAGATGGAGGGGAGTTCGAAGTTTTCACAGCGATGAGATGGAAGAAAGGAGAGTGAAGGGTTTGTGCTTTAAGTGTGGGGGTAAGTATCACTCTACCTGTCCTGAACGATCTCTGAGGGTGCTTATTCTAGGAGAGGGTGAATCTATGAATGAAGATGGTGAAATTGTGAGGTTGGAAGAAGTGACGGAGGTTGAAGAAGAGGAAATTGAAGGAGAATGCAAACTGATGGGAGTTTTGGGAAGTATGGGAGAGTCTCAAACCATGAAGGTGGAGGGGGAAATACAAGATGTTGATTTAATGGTGCTAATTGACAGTGGAGCTAGTCATAATTTCATCTCACCTAAAGTCACTACTGCTTTAGGGTTGACAATCTCTCCTACCACAGCTCGTTATATTAAGCTGGGGGATGGACACAAGGTGATGACAAGGGGTGTGTGTAAGgggttgaagatgaagatgggGGAGTTTGAGATAGCTGTGGATGCTCTGGTGTTGGAGTTAGGAGGAATGGATATGGTGTTGGGTGTGGCTTGGTTGAGTACATTGGGGAAGGTGATCATGGATTGGAAGAATATGTCAATGCAATTTTCACAAGATAACAAGCTGGTAAAATTGCAAGGTCAGAAGAGTAGGAGTCCAAGGCAATGCTATTTGAACTCTTATTTACAAAATGTTGATTTCAGTAGGGAAGAATTGAATTGGTGGTGGACTGATATGAAGTCAATGGAAATTTCAAAACCAGAAATTCCAAGAGACTTACAGTTGTTATTGGAAGAATTCCAAAGTGTGTTTCAAGATAGTATTCAGCTAGCTCCTGAGAGGAGTCAAGTGCATCAGATTAAGCTGTATCCTGATCATGGAGACATCAATGAATGTGATtctatgaaaatgaaattggatCTCAAAGAGAAGGAGTTATCTGAATGGGAGGAAAAACTCAATGCCAGAGAAAAAGTTGAGATTCAGAAGCTTCTTGATCACATTGCTGTCTTTTATGTGAAGAAGCAGGAGTTTGAGAGTGAATtggatgaaaaaagaaaatcatttgaAGATGGATTGAGGAATAGATTGGTAGAAGTGGAAAAGAAAGAAGGTGAAGTGAATCACACAGAGGAGAAGCTTGCAAAATGGGAGCAGGCCATGGAAAATAAAGCAAATAAGCTCAAGGAGAAAAAGAAGGAATATAAAGTAAAAGTCAAAGCTTTGAAGGAAAGGGAGAAGTCTATTATTATGTATGAGGAAAAATACTTAGGAAAGGAGAAGGTTAAAATAGAAAGTGAGAGAGACGAAGATGATTCTAGAAGTAAAAGAAGGAAAAATGAGAATCAATCCAATGAAGGGGCAGTATCAGAGCCACGGATTGTGATGCAAAGTTCTATCCCTGGAGACGGCTTTCGCTGGAGGAAATATGGACAACATGTGGCGAAAGGAACTCCATATCCCAGAAGTTATTATAGATGTACTACTATCGGATGTAAGGTTCTCAAACGTGTGGAAAGAGCAATAGATGACCCAGAATCATTTGTGACTACATATGAAGGAGGAGAGCACAACCATAAGATGTCCGCTCAATAA 2406 0.414 MPRRAAQPKMGDRVEALETRMGSVDTTLEELVHQMHQHTTQMQQQSAALARLSQQISQRGGSFEGETSMDNSSHGESRLAGKKVKLPLFDGDDPVAWITRAEIYFDVQNTEEAMRVKLACLSMEGSTIHWFNLLMETEDDLTWVKLKRALIARYGGRRLENPFEELSALSQKGSVEDFVESFELLSSQIGRLPEEQYLGYFMSGLKPQIRRRVRTLNPRNRMEMMRIAKDVEEELKDEDDDGDRRTSKKGGYEKMGQKDWAGFTRNRNGYQKSGTTKRWRGVRSFHSDEMEERRVKGLCFKCGGKYHSTCPERSLRVLILGEGESMNEDGEIVRLEEVTEVEEEEIEGECKLMGVLGSMGESQTMKVEGEIQDVDLMVLIDSGASHNFISPKVTTALGLTISPTTARYIKLGDGHKVMTRGVCKGLKMKMGEFEIAVDALVLELGGMDMVLGVAWLSTLGKVIMDWKNMSMQFSQDNKLVKLQGQKSRSPRQCYLNSYLQNVDFSREELNWWWTDMKSMEISKPEIPRDLQLLLEEFQSVFQDSIQLAPERSQVHQIKLYPDHGDINECDSMKMKLDLKEKELSEWEEKLNAREKVEIQKLLDHIAVFYVKKQEFESELDEKRKSFEDGLRNRLVEVEKKEGEVNHTEEKLAKWEQAMENKANKLKEKKKEYKVKVKALKEREKSIIMYEEKYLGKEKVKIESERDEDDSRSKRRKNENQSNEGAVSEPRIVMQSSIPGDGFRWRKYGQHVAKGTPYPRSYYRCTTIGCKVLKRVERAIDDPESFVTTYEGGEHNHKMSAQ 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00847 801 SMART WRKY_cls 738 798 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00847 801 SUPERFAMILY Acid proteases 364 463 IPR021109 -
Tsu03g00847 801 Gene3D Acid Proteases 353 483 IPR021109 -
Tsu03g00847 801 SUPERFAMILY WRKY DNA-binding domain 732 798 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g00847 801 MobiDBLite consensus disorder prediction 54 77 - -
Tsu03g00847 801 MobiDBLite consensus disorder prediction 240 255 - -
Tsu03g00847 801 MobiDBLite consensus disorder prediction 700 721 - -
Tsu03g00847 801 CDD retropepsin_like 367 456 - -
Tsu03g00847 801 Coils Coil 637 682 - -
Tsu03g00847 801 ProSiteProfiles WRKY domain profile. 733 799 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00847 801 Pfam Ty3 transposon capsid-like protein 100 231 IPR045358 -
Tsu03g00847 801 MobiDBLite consensus disorder prediction 54 75 - -
Tsu03g00847 801 Pfam WRKY DNA -binding domain 740 797 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g00847 801 PANTHER DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE 66 565 - -
Tsu03g00847 801 Coils Coil 35 55 - -
Tsu03g00847 801 Gene3D WRKY domain 726 799 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g00847 801 Coils Coil 569 596 - -
Tsu03g00847 801 Pfam Retroviral aspartyl protease 372 463 - -
Tsu03g00847 801 MobiDBLite consensus disorder prediction 232 258 - -
Tsu03g00847 801 MobiDBLite consensus disorder prediction 700 732 - -
Tsu03g00847 801 PANTHER - 66 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00847 Tsu-Chr3 7716407 7720982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00847 707 798 WRKY Transcription Factor Family AT2G37260 59.783 1.01e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu03g00847 RVP_2 1.1e-12 CL0129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00847 - - gmx:102663417 600.897