Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00840 ATGGGATCAGGTTCTTCACCTTGTGCTTCTTGCAAATTGTTGAGAAGGCGTTGCACACAAGAATGCATCTTTGCTCCTTATTTTCCTTCAGATGATCCACGCAAATTTGCCATTGTTCATAAGGTCTTTGGTGCTAGCAATATCAGCAAAATGTTGCAGGAACTTCCAATTCATCAAAGAACAGAAGCAGTAAACAGTTTAGTTTATGAAGCAAATGCAAGAGTTAGAGATCCTGTTTATGGATGTGTTGGAGCAATATCATACCTTCAAAGTCAAGTTTCACAATTACAAATGCAACTTGCAGTGGCTCAAGCAGAGATACTCTGCATCCAGATGCAACAAGATTCTGCTACTGTTACTGACTCATTACCAACACATGTTGACCAAGATGACAAATTGATGCTCTTATCTGAAAATAATAATTGCTATGGAGTCCTTCCACAATATCTCAActttccatcttcttcttcatcatcttctaaTGTATTTCAAGATTATGAGCCTCTTAAGAGAGAGACTTTTTGGACTTAA 531 0.3578 MGSGSSPCASCKLLRRRCTQECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPIHQRTEAVNSLVYEANARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQDSATVTDSLPTHVDQDDKLMLLSENNNCYGVLPQYLNFPSSSSSSSNVFQDYEPLKRETFWT 176
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00840 176 Coils Coil 86 106 - -
Tsu03g00840 176 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 1 173 - -
Tsu03g00840 176 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Tsu03g00840 176 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Tsu03g00840 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 173 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu03g00840 Tsu-Chr3 7632951 7634353 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00840 2 176 AS2 family AT2G30130 63.351 2.47e-77 227
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu03g00840 LOB 3.8e-42 No_clan
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00840 03 7632951 7634353 Tsu03g00840 03 7632951 7634353 ECH